| Literature DB >> 21522248 |
Abstract
The title Schiff base zinc(II) complex, [Zn(C(13)H(10)ClN(2)O)I(CH(3)OH)], was synthesized by the reaction of 5-chloro-salicyl-aldehyde, 2-amino-methyl-pyridine and zinc iodide in methanol. The Zn(II) atom is five-coordinated by one phenolate O atom, one imine and one pyridine N atom of the Schiff base ligand, one methanol O atom and one I atom, forming a distorted square-pyramidal geometry, with the I atom at the apical site. The dihedral angle between the benzene and pyridine rings is 22.9 (2)°. In the crystal, centrosymmetrically related mol-ecules are linked through inter-molecular O-H⋯O hydrogen bonds, forming dimers.Entities:
Year: 2011 PMID: 21522248 PMCID: PMC3052144 DOI: 10.1107/S160053681100417X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C13H10ClN2O)I(CH4O)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3746 reflections |
| θ = 2.7–27.8° | |
| µ = 3.59 mm−1 | |
| β = 98.994 (1)° | Block, colorless |
| 0.20 × 0.20 × 0.18 mm | |
| Bruker SMART CCD area-detector diffractometer | 3522 independent reflections |
| Radiation source: fine-focus sealed tube | 2947 reflections with |
| graphite | |
| ω scans | θmax = 27.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 9273 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3522 reflections | (Δ/σ)max = 0.003 |
| 195 parameters | Δρmax = 0.37 e Å−3 |
| 1 restraint | Δρmin = −0.91 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.56550 (5) | 1.00055 (2) | 0.370141 (16) | 0.03411 (9) | |
| Cl1 | 0.80941 (15) | 0.43991 (6) | 0.42899 (5) | 0.0673 (3) | |
| I1 | 0.20664 (3) | 1.054046 (16) | 0.337917 (10) | 0.04454 (7) | |
| O1 | 0.5675 (3) | 0.87992 (14) | 0.44157 (10) | 0.0428 (5) | |
| O2 | 0.6619 (3) | 1.10027 (17) | 0.45789 (11) | 0.0461 (5) | |
| N1 | 0.6673 (3) | 0.89862 (17) | 0.29675 (11) | 0.0343 (5) | |
| N2 | 0.6831 (3) | 1.10583 (17) | 0.29614 (12) | 0.0353 (5) | |
| C1 | 0.6966 (4) | 0.7424 (2) | 0.37342 (14) | 0.0331 (6) | |
| C2 | 0.6271 (4) | 0.7827 (2) | 0.43675 (14) | 0.0350 (6) | |
| C3 | 0.6226 (5) | 0.7138 (2) | 0.49658 (16) | 0.0502 (8) | |
| H3 | 0.5819 | 0.7388 | 0.5394 | 0.060* | |
| C4 | 0.6768 (5) | 0.6104 (2) | 0.49358 (17) | 0.0517 (8) | |
| H4 | 0.6702 | 0.5664 | 0.5338 | 0.062* | |
| C5 | 0.7407 (5) | 0.5715 (2) | 0.43160 (17) | 0.0443 (7) | |
| C6 | 0.7511 (4) | 0.6356 (2) | 0.37262 (16) | 0.0394 (6) | |
| H6 | 0.7951 | 0.6086 | 0.3310 | 0.047* | |
| C7 | 0.7123 (4) | 0.8024 (2) | 0.30781 (15) | 0.0357 (6) | |
| H7 | 0.7599 | 0.7676 | 0.2697 | 0.043* | |
| C8 | 0.6893 (5) | 0.9462 (2) | 0.22567 (15) | 0.0450 (7) | |
| H8A | 0.5762 | 0.9319 | 0.1896 | 0.054* | |
| H8B | 0.7983 | 0.9150 | 0.2076 | 0.054* | |
| C9 | 0.7177 (4) | 1.0624 (2) | 0.23317 (15) | 0.0364 (6) | |
| C10 | 0.7742 (4) | 1.1230 (3) | 0.17688 (15) | 0.0451 (7) | |
| H10 | 0.7966 | 1.0917 | 0.1329 | 0.054* | |
| C11 | 0.7966 (4) | 1.2294 (3) | 0.18702 (17) | 0.0492 (8) | |
| H11 | 0.8336 | 1.2712 | 0.1499 | 0.059* | |
| C12 | 0.7637 (4) | 1.2735 (2) | 0.25260 (17) | 0.0480 (7) | |
| H12 | 0.7803 | 1.3452 | 0.2610 | 0.058* | |
| C13 | 0.7061 (4) | 1.2099 (2) | 0.30520 (17) | 0.0437 (7) | |
| H13 | 0.6817 | 1.2400 | 0.3493 | 0.052* | |
| C14 | 0.8502 (5) | 1.1310 (3) | 0.48795 (17) | 0.0548 (8) | |
| H14A | 0.8972 | 1.0869 | 0.5296 | 0.082* | |
| H14B | 0.8498 | 1.2029 | 0.5040 | 0.082* | |
| H14C | 0.9315 | 1.1240 | 0.4507 | 0.082* | |
| H2 | 0.585 (4) | 1.104 (2) | 0.4897 (14) | 0.055 (9)* |
| Zn1 | 0.03959 (19) | 0.03446 (17) | 0.03043 (16) | 0.00566 (13) | 0.01222 (13) | 0.00098 (12) |
| Cl1 | 0.0921 (7) | 0.0349 (4) | 0.0725 (6) | 0.0165 (4) | 0.0054 (5) | −0.0032 (4) |
| I1 | 0.03836 (12) | 0.05586 (13) | 0.04069 (12) | 0.01147 (9) | 0.01019 (8) | 0.00744 (8) |
| O1 | 0.0617 (13) | 0.0352 (10) | 0.0351 (10) | 0.0147 (9) | 0.0191 (9) | 0.0028 (8) |
| O2 | 0.0553 (14) | 0.0511 (12) | 0.0363 (11) | −0.0032 (10) | 0.0210 (10) | −0.0105 (9) |
| N1 | 0.0387 (13) | 0.0371 (12) | 0.0285 (11) | 0.0009 (10) | 0.0102 (9) | −0.0023 (9) |
| N2 | 0.0354 (13) | 0.0385 (12) | 0.0333 (12) | 0.0014 (10) | 0.0096 (10) | 0.0029 (10) |
| C1 | 0.0311 (14) | 0.0365 (14) | 0.0320 (13) | 0.0031 (11) | 0.0055 (11) | −0.0022 (11) |
| C2 | 0.0359 (15) | 0.0360 (14) | 0.0327 (14) | 0.0056 (11) | 0.0045 (11) | −0.0002 (11) |
| C3 | 0.072 (2) | 0.0460 (17) | 0.0355 (15) | 0.0140 (16) | 0.0157 (15) | 0.0035 (13) |
| C4 | 0.072 (2) | 0.0411 (16) | 0.0431 (17) | 0.0130 (16) | 0.0112 (15) | 0.0108 (14) |
| C5 | 0.0494 (18) | 0.0337 (14) | 0.0481 (17) | 0.0080 (13) | 0.0023 (14) | −0.0022 (12) |
| C6 | 0.0381 (16) | 0.0379 (15) | 0.0421 (16) | 0.0038 (12) | 0.0063 (12) | −0.0065 (12) |
| C7 | 0.0356 (15) | 0.0401 (15) | 0.0330 (14) | 0.0003 (12) | 0.0104 (11) | −0.0102 (12) |
| C8 | 0.061 (2) | 0.0469 (17) | 0.0299 (14) | 0.0002 (14) | 0.0149 (14) | −0.0022 (12) |
| C9 | 0.0304 (15) | 0.0473 (16) | 0.0323 (14) | 0.0017 (12) | 0.0079 (11) | 0.0051 (12) |
| C10 | 0.0418 (17) | 0.061 (2) | 0.0338 (15) | 0.0001 (14) | 0.0104 (13) | 0.0063 (13) |
| C11 | 0.0449 (18) | 0.0580 (19) | 0.0461 (17) | −0.0019 (14) | 0.0111 (14) | 0.0198 (15) |
| C12 | 0.0471 (18) | 0.0418 (16) | 0.0557 (19) | 0.0003 (14) | 0.0101 (15) | 0.0103 (14) |
| C13 | 0.0485 (18) | 0.0404 (16) | 0.0433 (16) | 0.0046 (13) | 0.0108 (13) | 0.0030 (13) |
| C14 | 0.057 (2) | 0.066 (2) | 0.0415 (17) | −0.0016 (17) | 0.0095 (15) | 0.0005 (15) |
| Zn1—O1 | 2.0111 (18) | C4—C5 | 1.373 (4) |
| Zn1—N1 | 2.071 (2) | C4—H4 | 0.9300 |
| Zn1—O2 | 2.071 (2) | C5—C6 | 1.361 (4) |
| Zn1—N2 | 2.158 (2) | C6—H6 | 0.9300 |
| Zn1—I1 | 2.6060 (5) | C7—H7 | 0.9300 |
| Cl1—C5 | 1.746 (3) | C8—C9 | 1.496 (4) |
| O1—C2 | 1.314 (3) | C8—H8A | 0.9700 |
| O2—C14 | 1.415 (4) | C8—H8B | 0.9700 |
| O2—H2 | 0.86 (3) | C9—C10 | 1.391 (4) |
| N1—C7 | 1.272 (3) | C10—C11 | 1.372 (4) |
| N1—C8 | 1.460 (3) | C10—H10 | 0.9300 |
| N2—C9 | 1.330 (3) | C11—C12 | 1.372 (4) |
| N2—C13 | 1.340 (3) | C11—H11 | 0.9300 |
| C1—C6 | 1.412 (4) | C12—C13 | 1.365 (4) |
| C1—C2 | 1.419 (3) | C12—H12 | 0.9300 |
| C1—C7 | 1.438 (4) | C13—H13 | 0.9300 |
| C2—C3 | 1.403 (4) | C14—H14A | 0.9600 |
| C3—C4 | 1.373 (4) | C14—H14B | 0.9600 |
| C3—H3 | 0.9300 | C14—H14C | 0.9600 |
| O1—Zn1—N1 | 88.42 (8) | C4—C5—Cl1 | 119.8 (2) |
| O1—Zn1—O2 | 89.96 (8) | C5—C6—C1 | 121.3 (3) |
| N1—Zn1—O2 | 140.91 (9) | C5—C6—H6 | 119.4 |
| O1—Zn1—N2 | 156.05 (8) | C1—C6—H6 | 119.4 |
| N1—Zn1—N2 | 77.17 (8) | N1—C7—C1 | 126.4 (2) |
| O2—Zn1—N2 | 89.42 (8) | N1—C7—H7 | 116.8 |
| O1—Zn1—I1 | 104.65 (6) | C1—C7—H7 | 116.8 |
| N1—Zn1—I1 | 116.29 (6) | N1—C8—C9 | 111.1 (2) |
| O2—Zn1—I1 | 101.87 (6) | N1—C8—H8A | 109.4 |
| N2—Zn1—I1 | 98.90 (6) | C9—C8—H8A | 109.4 |
| C2—O1—Zn1 | 130.13 (16) | N1—C8—H8B | 109.4 |
| C14—O2—Zn1 | 130.14 (18) | C9—C8—H8B | 109.4 |
| C14—O2—H2 | 112 (2) | H8A—C8—H8B | 108.0 |
| Zn1—O2—H2 | 113 (2) | N2—C9—C10 | 121.3 (3) |
| C7—N1—C8 | 118.7 (2) | N2—C9—C8 | 116.7 (2) |
| C7—N1—Zn1 | 127.11 (18) | C10—C9—C8 | 122.0 (2) |
| C8—N1—Zn1 | 114.18 (16) | C11—C10—C9 | 119.2 (3) |
| C9—N2—C13 | 118.8 (2) | C11—C10—H10 | 120.4 |
| C9—N2—Zn1 | 115.00 (17) | C9—C10—H10 | 120.4 |
| C13—N2—Zn1 | 125.93 (18) | C12—C11—C10 | 119.2 (3) |
| C6—C1—C2 | 119.1 (2) | C12—C11—H11 | 120.4 |
| C6—C1—C7 | 116.5 (2) | C10—C11—H11 | 120.4 |
| C2—C1—C7 | 124.4 (2) | C13—C12—C11 | 118.7 (3) |
| O1—C2—C3 | 119.3 (2) | C13—C12—H12 | 120.7 |
| O1—C2—C1 | 123.4 (2) | C11—C12—H12 | 120.7 |
| C3—C2—C1 | 117.3 (2) | N2—C13—C12 | 122.9 (3) |
| C4—C3—C2 | 121.8 (3) | N2—C13—H13 | 118.6 |
| C4—C3—H3 | 119.1 | C12—C13—H13 | 118.6 |
| C2—C3—H3 | 119.1 | O2—C14—H14A | 109.5 |
| C5—C4—C3 | 120.5 (3) | O2—C14—H14B | 109.5 |
| C5—C4—H4 | 119.7 | H14A—C14—H14B | 109.5 |
| C3—C4—H4 | 119.7 | O2—C14—H14C | 109.5 |
| C6—C5—C4 | 120.0 (3) | H14A—C14—H14C | 109.5 |
| C6—C5—Cl1 | 120.2 (2) | H14B—C14—H14C | 109.5 |
| H··· | ||||
| O2—H2···O1i | 0.86 (3) | 1.79 (3) | 2.643 (3) | 176 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O1i | 0.86 (3) | 1.79 (3) | 2.643 (3) | 176 (3) |
Symmetry code: (i) .