Literature DB >> 21520331

Bioinformatics for human genetics: promises and challenges.

Annika Lindblom1, Peter N Robinson.   

Abstract

Recent developments, including next-generation sequencing (NGS), bio-ontologies and the Semantic Web, and the growing role of hospital information technology (IT) systems and electronic health records, amass ever-increasing amounts of data before human genetics scientists and clinicians. However, they have ever-improving tools to analyze those data for research and clinical care. Correspondingly, the field of bioinformatics is turning to research questions in the field of human genetics, and the field of human genetics is making greater use of bioinformatic algorithms and tools. The choice of "Bioinformatics and Human Genetics" as the topic of this special issue of Human Mutation reflects this new importance of bioinformatics and medical informatics in human genetics. Experts from among the attendees of the Paris 2010 Human Variome Project symposium provide a survey of some of the "hot" computational topics over the next decade. These experts identify the promise-what human geneticists who are not themselves bioinformaticians stand to gain-as well as the challenges and unmet needs that are likely to represent fruitful areas of research.
© 2011 Wiley-Liss, Inc.

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Year:  2011        PMID: 21520331     DOI: 10.1002/humu.21468

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  9 in total

1.  Concept mapping One-Carbon Metabolism to model future ontologies for nutrient-gene-phenotype interactions.

Authors:  A C Joslin; R Green; J B German; M C Lange
Journal:  Genes Nutr       Date:  2014-08-05       Impact factor: 5.523

2.  Modeling mutant/wild-type interactions to ascertain pathogenicity of PROKR2 missense variants in patients with isolated GnRH deficiency.

Authors:  Kimberly H Cox; Luciana M B Oliveira; Lacey Plummer; Braden Corbin; Thomas Gardella; Ravikumar Balasubramanian; William F Crowley
Journal:  Hum Mol Genet       Date:  2018-01-15       Impact factor: 6.150

3.  Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error.

Authors:  Wonkuk Kim; Douglas Londono; Lisheng Zhou; Jinchuan Xing; Alejandro Q Nato; Anthony Musolf; Tara C Matise; Stephen J Finch; Derek Gordon
Journal:  Hum Hered       Date:  2013-04-11       Impact factor: 0.444

4.  Identification of differential key biomarkers in the synovial tissue between rheumatoid arthritis and osteoarthritis using bioinformatics analysis.

Authors:  Runrun Zhang; Xinpeng Zhou; Yehua Jin; Cen Chang; Rongsheng Wang; Jia Liu; Junyu Fan; Dongyi He
Journal:  Clin Rheumatol       Date:  2021-07-05       Impact factor: 2.980

5.  SVInterpreter: A Comprehensive Topologically Associated Domain-Based Clinical Outcome Prediction Tool for Balanced and Unbalanced Structural Variants.

Authors:  Joana Fino; Bárbara Marques; Zirui Dong; Dezső David
Journal:  Front Genet       Date:  2021-12-01       Impact factor: 4.599

6.  Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis.

Authors:  María Taboada; Diego Martínez; Belén Pilo; Adriano Jiménez-Escrig; Peter N Robinson; María J Sobrido
Journal:  BMC Med Inform Decis Mak       Date:  2012-07-31       Impact factor: 2.796

7.  PhenoDigm: analyzing curated annotations to associate animal models with human diseases.

Authors:  Damian Smedley; Anika Oellrich; Sebastian Köhler; Barbara Ruef; Monte Westerfield; Peter Robinson; Suzanna Lewis; Christopher Mungall
Journal:  Database (Oxford)       Date:  2013-05-09       Impact factor: 3.451

8.  Status quo of annotation of human disease variants.

Authors:  Hanka Venselaar; Franscesca Camilli; Shima Gholizadeh; Marlou Snelleman; Han G Brunner; Gert Vriend
Journal:  BMC Bioinformatics       Date:  2013-12-04       Impact factor: 3.169

9.  A survey of tools for variant analysis of next-generation genome sequencing data.

Authors:  Stephan Pabinger; Andreas Dander; Maria Fischer; Rene Snajder; Michael Sperk; Mirjana Efremova; Birgit Krabichler; Michael R Speicher; Johannes Zschocke; Zlatko Trajanoski
Journal:  Brief Bioinform       Date:  2013-01-21       Impact factor: 11.622

  9 in total

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