Literature DB >> 21517789

A general probabilistic model for group independent component analysis and its estimation methods.

Ying Guo1.   

Abstract

Independent component analysis (ICA) has become an important tool for analyzing data from functional magnetic resonance imaging (fMRI) studies. ICA has been successfully applied to single-subject fMRI data. The extension of ICA to group inferences in neuroimaging studies, however, is challenging due to the unavailability of a prespecified group design matrix and the uncertainty in between-subjects variability in fMRI data. We present a general probabilistic ICA (PICA) model that can accommodate varying group structures of multisubject spatiotemporal processes. An advantage of the proposed model is that it can flexibly model various types of group structures in different underlying neural source signals and under different experimental conditions in fMRI studies. A maximum likelihood (ML) method is used for estimating this general group ICA model. We propose two expectation-maximization (EM) algorithms to obtain the ML estimates. The first method is an exact EM algorithm, which provides an exact E-step and an explicit noniterative M-step. The second method is a variational approximation EM algorithm, which is computationally more efficient than the exact EM. In simulation studies, we first compare the performance of the proposed general group PICA model and the existing probabilistic group ICA approach. We then compare the two proposed EM algorithms and show the variational approximation EM achieves comparable accuracy to the exact EM with significantly less computation time. An fMRI data example is used to illustrate application of the proposed methods.
© 2011, The International Biometric Society.

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Year:  2011        PMID: 21517789      PMCID: PMC3412593          DOI: 10.1111/j.1541-0420.2011.01601.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  8 in total

1.  A method for making group inferences from functional MRI data using independent component analysis.

Authors:  V D Calhoun; T Adali; G D Pearlson; J J Pekar
Journal:  Hum Brain Mapp       Date:  2001-11       Impact factor: 5.038

2.  ICA of fMRI group study data.

Authors:  Markus Svensén; Frithjof Kruggel; Habib Benali
Journal:  Neuroimage       Date:  2002-07       Impact factor: 6.556

3.  Probabilistic independent component analysis for functional magnetic resonance imaging.

Authors:  Christian F Beckmann; Stephen M Smith
Journal:  IEEE Trans Med Imaging       Date:  2004-02       Impact factor: 10.048

4.  Tensorial extensions of independent component analysis for multisubject FMRI analysis.

Authors:  C F Beckmann; S M Smith
Journal:  Neuroimage       Date:  2005-01-08       Impact factor: 6.556

5.  A unified framework for group independent component analysis for multi-subject fMRI data.

Authors:  Ying Guo; Giuseppe Pagnoni
Journal:  Neuroimage       Date:  2008-05-16       Impact factor: 6.556

6.  Analysis of fMRI data by blind separation into independent spatial components.

Authors:  M J McKeown; S Makeig; G G Brown; T P Jung; S S Kindermann; A J Bell; T J Sejnowski
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

7.  Statistical methods of estimation and inference for functional MR image analysis.

Authors:  E Bullmore; M Brammer; S C Williams; S Rabe-Hesketh; N Janot; A David; J Mellers; R Howard; P Sham
Journal:  Magn Reson Med       Date:  1996-02       Impact factor: 4.668

8.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

  8 in total
  14 in total

1.  Semiparametric Bayes conditional graphical models for imaging genetics applications.

Authors:  Suprateek Kundu; Jian Kang
Journal:  Stat (Int Stat Inst)       Date:  2016-11-27

2.  A hierarchical independent component analysis model for longitudinal neuroimaging studies.

Authors:  Yikai Wang; Ying Guo
Journal:  Neuroimage       Date:  2019-01-09       Impact factor: 6.556

3.  HINT: A hierarchical independent component analysis toolbox for investigating brain functional networks using neuroimaging data.

Authors:  Joshua Lukemire; Yikai Wang; Amit Verma; Ying Guo
Journal:  J Neurosci Methods       Date:  2020-04-30       Impact factor: 2.390

4.  Neuropsychiatric symptoms in Alzheimer's disease are related to functional connectivity alterations in the salience network.

Authors:  Marcio L F Balthazar; Fabrício R S Pereira; Tátila M Lopes; Elvis L da Silva; Ana Carolina Coan; Brunno M Campos; Niall W Duncan; Florindo Stella; Georg Northoff; Benito P Damasceno; Fernando Cendes
Journal:  Hum Brain Mapp       Date:  2013-02-18       Impact factor: 5.038

5.  An evaluation of independent component analyses with an application to resting-state fMRI.

Authors:  Benjamin B Risk; David S Matteson; David Ruppert; Ani Eloyan; Brian S Caffo
Journal:  Biometrics       Date:  2013-12-18       Impact factor: 2.571

6.  A depression network of functionally connected regions discovered via multi-attribute canonical correlation graphs.

Authors:  Jian Kang; F DuBois Bowman; Helen Mayberg; Han Liu
Journal:  Neuroimage       Date:  2016-07-26       Impact factor: 6.556

7.  INVESTIGATING DIFFERENCES IN BRAIN FUNCTIONAL NETWORKS USING HIERARCHICAL COVARIATE-ADJUSTED INDEPENDENT COMPONENT ANALYSIS.

Authors:  Ran Shi; Ying Guo
Journal:  Ann Appl Stat       Date:  2017-01-05       Impact factor: 2.083

8.  A hierarchical model for probabilistic independent component analysis of multi-subject fMRI studies.

Authors:  Ying Guo; Li Tang
Journal:  Biometrics       Date:  2013-08-22       Impact factor: 2.571

9.  Estimating dynamic brain functional networks using multi-subject fMRI data.

Authors:  Suprateek Kundu; Jin Ming; Jordan Pierce; Jennifer McDowell; Ying Guo
Journal:  Neuroimage       Date:  2018-07-24       Impact factor: 6.556

10.  Brain Imaging Analysis.

Authors:  F Dubois Bowman
Journal:  Annu Rev Stat Appl       Date:  2014-01       Impact factor: 5.810

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