Literature DB >> 21516397

Online verification of human cell line identity by STR DNA typing.

Wilhelm G Dirks1, Hans G Drexler.   

Abstract

The main prerequisition for any research, development, or production programs involving cell lines is whether a cell line is authentic or not. Microsatellites in the human genome harboring short tandem repeat (STR) DNA markers allow the identification of individual cell lines at the DNA level. Polymerase chain reaction (PCR) amplification of eight highly polymorphic microsatellite STR loci and gender determination have been proven to be the best tools for screening the uniqueness of DNA profiles in an STR database. The main Biological Resource Centers (BRCs), ATCC, DSMZ, JCRB, and RIKEN, have generated large databases of STR cell line profiles for identity control. In cooperation with the Japanese BRCs, DSMZ has piloted the generation of the most comprehensive international reference database, which is linked to a simple search engine for interrogating STR cell line profiles. The tool of online -verification of cell line identities is available on the respective homepages of JCRB and DSMZ ( http://cellbank.nibio.go.jp/cellbank_e.html , http://www.dsmz.de/STRanalysis ). The following sections describe a rapid, practical, inexpensive, and reliable method available to students, technicians, and scientists.

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Year:  2011        PMID: 21516397     DOI: 10.1007/978-1-61779-080-5_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Constitutive AP-1 activity and EBV infection induce PD-L1 in Hodgkin lymphomas and posttransplant lymphoproliferative disorders: implications for targeted therapy.

Authors:  Michael R Green; Scott Rodig; Przemyslaw Juszczynski; Jing Ouyang; Papiya Sinha; Evan O'Donnell; Donna Neuberg; Margaret A Shipp
Journal:  Clin Cancer Res       Date:  2012-01-23       Impact factor: 12.531

2.  DNA profiling analysis of endometrial and ovarian cell lines reveals misidentification, redundancy and contamination.

Authors:  Christopher Korch; Monique A Spillman; Twila A Jackson; Britta M Jacobsen; Susan K Murphy; Bruce A Lessey; V Craig Jordan; Andrew P Bradford
Journal:  Gynecol Oncol       Date:  2012-06-16       Impact factor: 5.482

3.  Detection algorithm for the validation of human cell lines.

Authors:  Névine Eltonsy; Vivian Gabisi; Xuesong Li; K Blair Russe; Gordon B Mills; Katherine Stemke-Hale
Journal:  Int J Cancer       Date:  2012-04-12       Impact factor: 7.396

4.  Authentication of African green monkey cell lines using human short tandem repeat markers.

Authors:  Jamie L Almeida; Carolyn R Hill; Kenneth D Cole
Journal:  BMC Biotechnol       Date:  2011-11-07       Impact factor: 2.563

5.  Functional hyper-IL-6 from vaccinia virus-colonized tumors triggers platelet formation and helps to alleviate toxicity of mitomycin C enhanced virus therapy.

Authors:  Julia B Sturm; Michael Hess; Stephanie Weibel; Nanhai G Chen; Yong A Yu; Qian Zhang; Ulrike Donat; Cora Reiss; Stepan Gambaryan; Georg Krohne; Jochen Stritzker; Aladar A Szalay
Journal:  J Transl Med       Date:  2012-01-11       Impact factor: 5.531

6.  Mouse cell line authentication.

Authors:  Jamie L Almeida; Carolyn R Hill; Kenneth D Cole
Journal:  Cytotechnology       Date:  2013-02-22       Impact factor: 2.058

Review 7.  Genomics, microRNA, epigenetics, and proteomics for future diagnosis, treatment and monitoring response in upper GI cancers.

Authors:  Björn L D M Brücher; Yan Li; Philipp Schnabel; Martin Daumer; Timothy J Wallace; Rainer Kube; Bruno Zilberstein; Scott Steele; Jan L A Voskuil; Ijaz S Jamall
Journal:  Clin Transl Med       Date:  2016-04-06

Review 8.  A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells.

Authors:  Andreas Kurtz; Stefanie Seltmann; Amos Bairoch; Marie-Sophie Bittner; Kevin Bruce; Amanda Capes-Davis; Laura Clarke; Jeremy M Crook; Laurence Daheron; Johannes Dewender; Adam Faulconbridge; Wataru Fujibuchi; Alexander Gutteridge; Derek J Hei; Yong-Ou Kim; Jung-Hyun Kim; Anja Kolb- Kokocinski; Fritz Lekschas; Geoffrey P Lomax; Jeanne F Loring; Tenneille Ludwig; Nancy Mah; Tohru Matsui; Robert Müller; Helen Parkinson; Michael Sheldon; Kelly Smith; Harald Stachelscheid; Glyn Stacey; Ian Streeter; Anna Veiga; Ren-He Xu
Journal:  Stem Cell Reports       Date:  2018-01-09       Impact factor: 7.765

9.  Human sample authentication in biomedical research: comparison of two platforms.

Authors:  Harshitha Shobha Manjunath; Nicola James; Rebecca Mathew; Muna Al Hashmi; Lee Silcock; Ida Biunno; Pasquale De Blasio; Chidambaram Manickam; Sara Tomei
Journal:  Sci Rep       Date:  2021-07-07       Impact factor: 4.379

10.  CaPSID: a bioinformatics platform for computational pathogen sequence identification in human genomes and transcriptomes.

Authors:  Ivan Borozan; Shane Wilson; Paola Blanchette; Philippe Laflamme; Stuart N Watt; Paul M Krzyzanowski; Fabrice Sircoulomb; Robert Rottapel; Philip E Branton; Vincent Ferretti
Journal:  BMC Bioinformatics       Date:  2012-08-17       Impact factor: 3.169

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