Literature DB >> 21515771

Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum.

Philippe Ortet1, Mohamed Barakat, David Lalaouna, Sylvain Fochesato, Valérie Barbe, Benoit Vacherie, Catherine Santaella, Thierry Heulin, Wafa Achouak.   

Abstract

To shed light on the genetic equipment of the beneficial plant-associated bacterium Pseudomonas brassicacearum, we sequenced the whole genome of the strain NFM421. Its genome consists of one chromosome equipped with a repertoire of factors beneficial for plant growth. In addition, a complete type III secretion system and two complete type VI secretion systems were identified. We report here the first genome sequence of this species.

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Year:  2011        PMID： 21515771      PMCID： PMC3133198          DOI： 10.1128/JB.00411-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Phase-variable expression of an operon encoding extracellular alkaline protease, a serine protease homolog, and lipase in Pseudomonas brassicacearum.

Authors:  P Chabeaud; A de Groot; W Bitter; J Tommassen; T Heulin; W Achouak
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

2.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Authors:  Susanne M D Goldberg; Justin Johnson; Dana Busam; Tamara Feldblyum; Steve Ferriera; Robert Friedman; Aaron Halpern; Hoda Khouri; Saul A Kravitz; Federico M Lauro; Kelvin Li; Yu-Hui Rogers; Robert Strausberg; Granger Sutton; Luke Tallon; Torsten Thomas; Eli Venter; Marvin Frazier; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-13       Impact factor: 11.205

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  Pseudomonas brassicacearum sp. nov. and Pseudomonas thivervalensis sp. nov., two root-associated bacteria isolated from Brassica napus and Arabidopsis thaliana.

Authors:  W Achouak; L Sutra; T Heulin; J M Meyer; N Fromin; S Degraeve; R Christen; L Gardan
Journal:  Int J Syst Evol Microbiol       Date:  2000-01       Impact factor: 2.747

6.  Genetic diversity and biological control activity of novel species of closely related pseudomonads isolated from wheat field soils in South Australia.

Authors:  I L Ross; Y Alami; P R Harvey; W Achouak; M H Ryder
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

7.  Accuracy improvement for identifying translation initiation sites in microbial genomes.

Authors:  Huai-Qiu Zhu; Gang-Qing Hu; Zheng-Qing Ouyang; Jin Wang; Zhen-Su She
Journal:  Bioinformatics       Date:  2004-07-09       Impact factor: 6.937

8.  Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy.

Authors:  Wafa Achouak; Sandrine Conrod; Valérie Cohen; Thierry Heulin
Journal:  Mol Plant Microbe Interact       Date:  2004-08       Impact factor: 4.171

9.  P2CS: a database of prokaryotic two-component systems.

Authors:  Mohamed Barakat; Philippe Ortet; David E Whitworth
Journal:  Nucleic Acids Res       Date:  2010-11-04       Impact factor: 16.971

10.  Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.

Authors:  Dmitri V Mavrodi; Joyce E Loper; Ian T Paulsen; Linda S Thomashow
Journal:  BMC Microbiol       Date:  2009-01-13       Impact factor: 3.605
  10 in total
  24 in total

1.  Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.

Authors:  Miguel Redondo-Nieto; Matthieu Barret; John P Morrisey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Stephen R Giddens; Eric R Coppoolse; Candela Muriel; Willem J Stiekema; Paul B Rainey; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

2.  Multiple transcription-activating sequences regulate the RsmZ regulatory small RNA of Pseudomonas brassicacearum.

Authors:  D Lalaouna; S Fochesato; M Barakat; P Ortet; W Achouak
Journal:  J Bacteriol       Date:  2012-07-06       Impact factor: 3.490

3.  Degradation of Benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 Is Catalyzed by Enzymes Encoded in Distinct Catabolism Gene Clusters.

Authors:  Daiana de Lima-Morales; Diego Chaves-Moreno; Melissa L Wos-Oxley; Ruy Jáuregui; Ramiro Vilchez-Vargas; Dietmar H Pieper
Journal:  Appl Environ Microbiol       Date:  2015-10-16       Impact factor: 4.792

4.  Phenotypic switching in Pseudomonas brassicacearum involves GacS- and GacA-dependent Rsm small RNAs.

Authors:  David Lalaouna; Sylvain Fochesato; Lisa Sanchez; Philippe Schmitt-Kopplin; Dieter Haas; Thierry Heulin; Wafa Achouak
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

5.  Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere.

Authors:  Fernanda P Cid; Fumito Maruyama; Kazunori Murase; Steffen P Graether; Giovanni Larama; Leon A Bravo; Milko A Jorquera
Journal:  Extremophiles       Date:  2018-02-28       Impact factor: 2.395

Review 6.  Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.

Authors:  Brittan S Scales; Robert P Dickson; John J LiPuma; Gary B Huffnagle
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

7.  Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea.

Authors:  Emmanouil A Trantas; Grazia Licciardello; Nalvo F Almeida; Kamil Witek; Cinzia P Strano; Zane Duxbury; Filippos Ververidis; Dimitrios E Goumas; Jonathan D G Jones; David S Guttman; Vittoria Catara; Panagiotis F Sarris
Journal:  Front Microbiol       Date:  2015-08-07       Impact factor: 5.640

8.  Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator.

Authors:  Peter Burlinson; David Studholme; Joanna Cambray-Young; Darren Heavens; John Rathjen; Jonathan Hodgkin; Gail M Preston
Journal:  ISME J       Date:  2013-02-21       Impact factor: 10.302

9.  The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Authors:  Jin Duan; Wei Jiang; Zhenyu Cheng; John J Heikkila; Bernard R Glick
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

10.  Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.

Authors:  Miguel Redondo-Nieto; Matthieu Barret; John Morrissey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Candela Muriel; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal:  BMC Genomics       Date:  2013-01-25       Impact factor: 3.969
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