Literature DB >> 21515764

Complete genome sequence of strain IMCC9063, belonging to SAR11 subgroup 3, isolated from the Arctic Ocean.

Hyun-Myung Oh1, Ilnam Kang, Kiyoung Lee, Yoonra Jang, Seung-Il Lim, Jang-Cheon Cho.   

Abstract

Strain IMCC9063 is a novel isolate of the SAR11 clade and is distantly related to other cultured representatives in this clade. The strain was isolated off the coast of Svalbard, Norway, by applying high-throughput culturing methods based on dilution to extinction. Here we present the finished genome sequence of strain IMCC9063.

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Year:  2011        PMID： 21515764      PMCID： PMC3133293          DOI： 10.1128/JB.05033-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

Authors:  Michael S Rappé; Stephanie A Connon; Kevin L Vergin; Stephen J Giovannoni
Journal:  Nature       Date:  2002-08-08       Impact factor: 49.962

2.  SAR11 clade dominates ocean surface bacterioplankton communities.

Authors:  Robert M Morris; Michael S Rappé; Stephanie A Connon; Kevin L Vergin; William A Siebold; Craig A Carlson; Stephen J Giovannoni
Journal:  Nature       Date:  2002 Dec 19-26       Impact factor: 49.962

3.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

4.  Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site.

Authors:  Ulrich Stingl; Harry James Tripp; Stephen J Giovannoni
Journal:  ISME J       Date:  2007-07-05       Impact factor: 10.302

5.  Improved culturability of SAR11 strains in dilution-to-extinction culturing from the East Sea, West Pacific Ocean.

Authors:  Jaeho Song; Hyun-Myung Oh; Jang-Cheon Cho
Journal:  FEMS Microbiol Lett       Date:  2009-05-01       Impact factor: 2.742

6.  Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria.

Authors:  K G Field; D Gordon; T Wright; M Rappé; E Urback; K Vergin; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1997-01       Impact factor: 4.792

7.  Complete genome sequence of Robiginitalea biformata HTCC2501.

Authors:  Hyun-Myung Oh; Stephen J Giovannoni; Kiyoung Lee; Steve Ferriera; Justin Johnson; Jang-Cheon Cho
Journal:  J Bacteriol       Date:  2009-09-18       Impact factor: 3.490

8.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  9 in total
  14 in total

1.  Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea.

Authors:  Maliheh Mehrshad; Mohammad Ali Amoozegar; Rohit Ghai; Seyed Abolhassan Shahzadeh Fazeli; Francisco Rodriguez-Valera
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

2.  Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes.

Authors:  Trista J Vick-Majors; John C Priscu; Linda A Amaral-Zettler
Journal:  ISME J       Date:  2013-10-24       Impact factor: 10.302

Review 3.  The unique metabolism of SAR11 aquatic bacteria.

Authors:  H James Tripp
Journal:  J Microbiol       Date:  2013-04-27       Impact factor: 3.422

4.  Isolation, cultivation, and genome analysis of proteorhodopsin-containing SAR116-clade strain Candidatus Puniceispirillum marinum IMCC1322.

Authors:  Junhak Lee; Kae Kyoung Kwon; Seung-Il Lim; Jaeho Song; Ah Reum Choi; Sung-Hyun Yang; Kwang-Hwan Jung; Jung-Hyun Lee; Sung Gyun Kang; Hyun-Myung Oh; Jang-Cheon Cho
Journal:  J Microbiol       Date:  2019-06-14       Impact factor: 3.422

5.  Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal.

Authors:  Pedro J Cabello-Yeves; Tamara I Zemskaya; Riccardo Rosselli; Felipe H Coutinho; Alexandra S Zakharenko; Vadim V Blinov; Francisco Rodriguez-Valera
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

6.  Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.

Authors:  Robert T Green; Jonathan D Todd; Andrew W B Johnston
Journal:  ISME J       Date:  2012-11-29       Impact factor: 10.302

7.  Streamlining and core genome conservation among highly divergent members of the SAR11 clade.

Authors:  Jana Grote; J Cameron Thrash; Megan J Huggett; Zachary C Landry; Paul Carini; Stephen J Giovannoni; Michael S Rappé
Journal:  MBio       Date:  2012-09-18       Impact factor: 7.867

8.  Global biogeography of SAR11 marine bacteria.

Authors:  Mark V Brown; Federico M Lauro; Matthew Z DeMaere; Les Muir; David Wilkins; Torsten Thomas; Martin J Riddle; Jed A Fuhrman; Cynthia Andrews-Pfannkoch; Jeffrey M Hoffman; Jeffrey B McQuaid; Andrew Allen; Stephen R Rintoul; Ricardo Cavicchioli
Journal:  Mol Syst Biol       Date:  2012-07-17       Impact factor: 11.429

9.  Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis.

Authors:  Yi Li; Xiao-Di Hu; Rui-Heng Yang; Tom Hsiang; Ke Wang; De-Quan Liang; Fan Liang; De-Ming Cao; Fan Zhou; Ge Wen; Yi-Jian Yao
Journal:  Sci Rep       Date:  2015-09-15       Impact factor: 4.379

10.  Combined analyses of the ITS loci and the corresponding 16S rRNA genes reveal high micro- and macrodiversity of SAR11 populations in the Red Sea.

Authors:  David Kamanda Ngugi; Ulrich Stingl
Journal:  PLoS One       Date:  2012-11-20       Impact factor: 3.240
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