Literature DB >> 21507352

DNA methylation in zebrafish.

Mary G Goll1, Marnie E Halpern.   

Abstract

DNA methylation is crucial for normal development and cellular differentiation in many large-genome eukaryotes. The small tropical freshwater fish Danio rerio (zebrafish) has recently emerged as a powerful system for the study of DNA methylation, especially in the context of development. This review summarizes our current knowledge of DNA methylation in zebrafish and provides evidence for the general conservation of this system with mammals. In addition, emerging strategies are highlighted that use the fish model to address some of the key unanswered questions in DNA methylation research.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID： 21507352      PMCID： PMC5455991          DOI： 10.1016/B978-0-12-387685-0.00005-6

Source DB:  PubMed          Journal:  Prog Mol Biol Transl Sci        ISSN： 1877-1173            Impact factor:   3.622


  97 in total

Review 1.  Epigenetic reprogramming in mammals.

Authors:  Hugh D Morgan; Fátima Santos; Kelly Green; Wendy Dean; Wolf Reik
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

2.  Modulation of plasmid DNA methylation and expression in zebrafish embryos.

Authors:  P Collas
Journal:  Nucleic Acids Res       Date:  1998-10-01       Impact factor: 16.971

3.  Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

Authors:  B H Ramsahoye; D Biniszkiewicz; F Lyko; V Clark; A P Bird; R Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

4.  Antisense targeting of CXXC finger protein 1 inhibits genomic cytosine methylation and primitive hematopoiesis in zebrafish.

Authors:  Suzanne R L Young; Christen Mumaw; James A Marrs; David G Skalnik
Journal:  J Biol Chem       Date:  2006-10-04       Impact factor: 5.157

5.  Limited transcription of rat elastase I transgene repeats in transgenic mice.

Authors:  B P Davis; R J MacDonald
Journal:  Genes Dev       Date:  1988-01       Impact factor: 11.361

6.  Differential expression of the methyl-cytosine binding protein 2 gene in embryonic and adult brain of zebrafish.

Authors:  Louise E Coverdale; Christopher J Martyniuk; Vance L Trudeau; C Cristofre Martin
Journal:  Brain Res Dev Brain Res       Date:  2004-11-25

7.  Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression.

Authors:  J Murfett; X J Wang; G Hagen; T J Guilfoyle
Journal:  Plant Cell       Date:  2001-05       Impact factor: 11.277

8.  Sex-specific exons control DNA methyltransferase in mammalian germ cells.

Authors:  C Mertineit; J A Yoder; T Taketo; D W Laird; J M Trasler; T H Bestor
Journal:  Development       Date:  1998-03       Impact factor: 6.868

9.  Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.

Authors:  Bernhard Lehnertz; Yoshihide Ueda; Alwin A H A Derijck; Ulrich Braunschweig; Laura Perez-Burgos; Stefan Kubicek; Taiping Chen; En Li; Thomas Jenuwein; Antoine H F M Peters
Journal:  Curr Biol       Date:  2003-07-15       Impact factor: 10.834

10.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.

Authors:  Déborah Bourc'his; Timothy H Bestor
Journal:  Nature       Date:  2004-08-18       Impact factor: 49.962
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  28 in total

Review 1.  Epigenetic control on cell fate choice in neural stem cells.

Authors:  Xiao-Ling Hu; Yuping Wang; Qin Shen
Journal:  Protein Cell       Date:  2012-05-02       Impact factor: 14.870

2.  Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection.

Authors:  Caird E Rexroad; Roger L Vallejo; Sixin Liu; Yniv Palti; Gregory M Weber
Journal:  Mar Biotechnol (NY)       Date:  2013-05-25       Impact factor: 3.619

3.  Cytosine Methylation Affects the Mutability of Neighboring Nucleotides in Germline and Soma.

Authors:  Vassili Kusmartsev; Magdalena Drożdż; Benjamin Schuster-Böckler; Tobias Warnecke
Journal:  Genetics       Date:  2020-02-20       Impact factor: 4.562

4.  Epigenetic effects of environmental chemicals: insights from zebrafish.

Authors:  Neelakanteswar Aluru
Journal:  Curr Opin Toxicol       Date:  2017-07-14

5.  Lens development requires DNMT1 but takes place normally in the absence of both DNMT3A and DNMT3B activity.

Authors:  Thanh V Hoang; Evan R Horowitz; Blake R Chaffee; Peipei Qi; Rachel E Flake; Devin G Bruney; Blake J Rasor; Savana E Rosalez; Brad D Wagner; Michael L Robinson
Journal:  Epigenetics       Date:  2016-11-08       Impact factor: 4.528

Review 6.  Determinants of IBD Heritability: Genes, Bugs, and More.

Authors:  Williams Turpin; Ashleigh Goethel; Larbi Bedrani; Kenneth Croitoru Mdcm
Journal:  Inflamm Bowel Dis       Date:  2018-05-18       Impact factor: 5.325

Review 7.  DNA Methylation: Shared and Divergent Features across Eukaryotes.

Authors:  Robert J Schmitz; Zachary A Lewis; Mary G Goll
Journal:  Trends Genet       Date:  2019-08-06       Impact factor: 11.639

8.  Developmental exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin alters DNA methyltransferase (dnmt) expression in zebrafish (Danio rerio).

Authors:  Neelakanteswar Aluru; Elaine Kuo; Lily W Helfrich; Sibel I Karchner; Elwood A Linney; June E Pais; Diana G Franks
Journal:  Toxicol Appl Pharmacol       Date:  2015-02-27       Impact factor: 4.219

Review 9.  Genetic and epigenetic control of retinal development in zebrafish.

Authors:  Pawat Seritrakul; Jeffrey M Gross
Journal:  Curr Opin Neurobiol       Date:  2019-06-27       Impact factor: 6.627

10.  Global and gene specific DNA methylation changes during zebrafish development.

Authors:  Xiefan Fang; Jone Corrales; Cammi Thornton; Brian E Scheffler; Kristine L Willett
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2013-07-20       Impact factor: 2.231
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