Literature DB >> 21500795

Effect of solvation on the vertical ionization energy of thymine: from microhydration to bulk.

Debashree Ghosh1, Olexandr Isayev, Lyudmila V Slipchenko, Anna I Krylov.   

Abstract

The effect of hydration on the vertical ionization energy (VIE) of thymine was characterized using equation-of-motion ionization potential coupled-cluster (EOM-IP-CCSD) and effective fragment potential (EFP) methods. We considered several microsolvated clusters as well as thymine solvated in bulk water. The VIE in bulk water was computed by averaging over solvent-solute configurations obtained from equilibrium molecular dynamics trajectories at 300 K. The effect of microsolvation was analyzed and contrasted against the combined effect of the first solvation shell in bulk water. Microsolvation reduces the ionization energy (IE) by about 0.1 eV per water molecule, while the first solvation shell increases the IE by 0.1 eV. The subsequent solvation lowers the IE, and the bulk value of the solvent-induced shift of thymine's VIE is approximately -0.9 eV. The combined effect of the first solvation shell was explained in terms of specific solute-solvent interactions, which were investigated using model structures. The convergence of IE to the bulk value requires the hydration sphere of approximately 13.5 Å radius. The performance of the EOM-IP-CCSD/EFP scheme was benchmarked against full EOM-IP-CCSD using microhydrated structures. The errors were found to be less than 0.01-0.02 eV. The relative importance of the polarization and higher multipole moments in EFP model was also investigated.
© 2011 American Chemical Society

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Year:  2011        PMID: 21500795      PMCID: PMC3116069          DOI: 10.1021/jp110438c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  38 in total

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Authors:  Lyudmila V Slipchenko
Journal:  J Phys Chem A       Date:  2010-08-26       Impact factor: 2.781

2.  Influence of microhydration on the ionization energy thresholds of thymine: comparisons of theoretical calculations with experimental values.

Authors:  David M Close; Carlos E Crespo-Hernandez; Leonid Gorb; Jerzy Leszczynski
Journal:  J Phys Chem A       Date:  2006-06-15       Impact factor: 2.781

Review 3.  Advances in methods and algorithms in a modern quantum chemistry program package.

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Journal:  Phys Chem Chem Phys       Date:  2006-06-12       Impact factor: 3.676

4.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

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5.  Equation-of-motion coupled-cluster methods for open-shell and electronically excited species: the Hitchhiker's guide to Fock space.

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6.  Degree of initial hole localization/delocalization in ionized water clusters.

Authors:  Piotr A Pieniazek; Eric J Sundstrom; Stephen E Bradforth; Anna I Krylov
Journal:  J Phys Chem A       Date:  2009-04-23       Impact factor: 2.781

7.  An interpretation of the enhancement of the water dipole moment due to the presence of other water molecules.

Authors:  Daniel D Kemp; Mark S Gordon
Journal:  J Phys Chem A       Date:  2008-05-13       Impact factor: 2.781

8.  Electrostatic energy in the effective fragment potential method: theory and application to benzene dimer.

Authors:  Lyudmila V Slipchenko; Mark S Gordon
Journal:  J Comput Chem       Date:  2007-01-15       Impact factor: 3.376

9.  Vertical ionization potentials of nucleobases in a fully solvated DNA environment.

Authors:  Emilie Cauët; Marat Valiev; John H Weare
Journal:  J Phys Chem B       Date:  2010-05-06       Impact factor: 2.991

10.  Ionization-Induced Structural Changes in Uracil Dimers and Their Spectroscopic Signatures.

Authors:  Anna A Zadorozhnaya; Anna I Krylov
Journal:  J Chem Theory Comput       Date:  2010-03-09       Impact factor: 6.006

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  2 in total

1.  Polarizable embedding for simulating redox potentials of biomolecules.

Authors:  Ruslan N Tazhigulov; Pradeep Kumar Gurunathan; Yongbin Kim; Lyudmila V Slipchenko; Ksenia B Bravaya
Journal:  Phys Chem Chem Phys       Date:  2019-06-05       Impact factor: 3.676

2.  First-principle protocol for calculating ionization energies and redox potentials of solvated molecules and ions: theory and application to aqueous phenol and phenolate.

Authors:  Debashree Ghosh; Anirban Roy; Robert Seidel; Bernd Winter; Stephen Bradforth; Anna I Krylov
Journal:  J Phys Chem B       Date:  2012-05-04       Impact factor: 2.991

  2 in total

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