Literature DB >> 16759139

Influence of microhydration on the ionization energy thresholds of thymine: comparisons of theoretical calculations with experimental values.

David M Close1, Carlos E Crespo-Hernandez, Leonid Gorb, Jerzy Leszczynski.   

Abstract

In the present study the ionization energy thresholds (IETs) of thymine, and thymine keto-enol tautomers, have been calculated (with the B3LYP, and P3 levels of theory using the standard 6-31++G(d,p) basis set) with 1-3 water molecules placed in the first hydration shell. Calculations show there is a distinct effect of microhydration on the IET of thymine. The first water molecule is seen to decrease the IET by about 0.1 eV, whereas the second and third water molecules cause a further decrease of less than 0.1 eV each. The changes in IET calculated here for thymine with 1-3 waters of hydration are smaller than the experimental values determined by Kim et al. (J. Phys. Chem. 1996, 100, 7933). Therefore calculations have been performed on the microhydrated keto-enol tautomers of thymine. The calculated results on the keto-enol tautomers are seen to be in better agreement with the experimental results. However, the keto-enol thymine tautomers are considerably higher in energy than the canonical form of thymine, and there is presently no good evidence that these thymine tautomers are actually present in a supersonic jet-cooled experiment.

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Year:  2006        PMID: 16759139     DOI: 10.1021/jp061064k

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Effect of solvation on the vertical ionization energy of thymine: from microhydration to bulk.

Authors:  Debashree Ghosh; Olexandr Isayev; Lyudmila V Slipchenko; Anna I Krylov
Journal:  J Phys Chem A       Date:  2011-04-18       Impact factor: 2.781

2.  Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations.

Authors:  Alessandro Nicola Nardi; Alessio Olivieri; Marco D'Abramo
Journal:  J Phys Chem B       Date:  2022-06-07       Impact factor: 3.466

3.  Gas-phase hydrogen/deuterium exchange of 5'- and 3'-mononucleotides in a quadrupole ion trap: exploring the role of conformation and system energy.

Authors:  Joseph E Chipuk; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2007-02-06       Impact factor: 3.109

4.  Density Functional Method Study on the Cooperativity of Intermolecular H-bonding and π-π+ Stacking Interactions in Thymine-[Cnmim]Br (n = 2, 4, 6, 8, 10) Microhydrates.

Authors:  Yanni Wang; Chaowu Dai; Wei Huang; Tingting Ni; Jianping Cao; Jiangmei Pang; Huining Wei; Chaojie Wang
Journal:  Molecules       Date:  2022-09-22       Impact factor: 4.927

  4 in total

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