Literature DB >> 21498751

Microarray-based evaluation of whole-community genome DNA amplification methods.

Jian Wang1, Joy D Van Nostrand, Liyou Wu, Zhili He, Guanghe Li, Jizhong Zhou.   

Abstract

Three whole-community genome amplification methods, Bst, REPLI-g, and Templiphi, were evaluated using a microarray-based approach. The amplification biases of all methods were <3-fold. For pure-culture DNA, REPLI-g and Templiphi showed less bias than Bst. For community DNA, REPLI-g showed the least bias and highest number of genes, while Bst had the highest success rate and was suitable for low-quality DNA.

Mesh:

Year:  2011        PMID: 21498751      PMCID: PMC3131669          DOI: 10.1128/AEM.01834-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  29 in total

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Review 7.  Single-cell genomic sequencing using Multiple Displacement Amplification.

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  11 in total

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6.  Metagenomic analysis of the airborne environment in urban spaces.

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8.  Use of functional gene arrays for elucidating in situ biodegradation.

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9.  Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing.

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10.  Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome.

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Journal:  Microbiome       Date:  2014-01-30       Impact factor: 14.650

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