Literature DB >> 21487441

Cancer GAMAdb: database of cancer genetic associations from meta-analyses and genome-wide association studies.

Sheri D Schully1, Wei Yu, Victoria McCallum, Camilla B Benedicto, Linda M Dong, Anja Wulf, Melinda Clyne, Muin J Khoury.   

Abstract

In the field of cancer, genetic association studies are among the most active and well-funded research areas, and have produced hundreds of genetic associations, especially in the genome-wide association studies (GWAS) era. Knowledge synthesis of these discoveries is the first critical step in translating the rapidly emerging data from cancer genetic association research into potential applications for clinical practice. To facilitate the effort of translational research on cancer genetics, we have developed a continually updated database named Cancer Genome-wide Association and Meta Analyses database that contains key descriptive characteristics of each genetic association extracted from published GWAS and meta-analyses relevant to cancer risk. Here we describe the design and development of this tool with the aim of aiding the cancer research community to quickly obtain the current updated status in cancer genetic association studies.

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Year:  2011        PMID: 21487441      PMCID: PMC3172934          DOI: 10.1038/ejhg.2011.53

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  8 in total

1.  A navigator for human genome epidemiology.

Authors:  Wei Yu; Marta Gwinn; Melinda Clyne; Ajay Yesupriya; Muin J Khoury
Journal:  Nat Genet       Date:  2008-02       Impact factor: 38.330

Review 2.  Genetic susceptibility to cancer: the role of polymorphisms in candidate genes.

Authors:  Linda M Dong; John D Potter; Emily White; Cornelia M Ulrich; Lon R Cardon; Ulrike Peters
Journal:  JAMA       Date:  2008-05-28       Impact factor: 56.272

3.  Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.

Authors:  Muin J Khoury; Lars Bertram; Paolo Boffetta; Adam S Butterworth; Stephen J Chanock; Siobhan M Dolan; Isabel Fortier; Montserrat Garcia-Closas; Marta Gwinn; Julian P T Higgins; A Cecile J W Janssens; James Ostell; Ryan P Owen; Roberta A Pagon; Timothy R Rebbeck; Nathaniel Rothman; Jonine L Bernstein; Paul R Burton; Harry Campbell; Anand Chockalingam; Helena Furberg; Julian Little; Thomas R O'Brien; Daniela Seminara; Paolo Vineis; Deborah M Winn; Wei Yu; John P A Ioannidis
Journal:  Am J Epidemiol       Date:  2009-06-04       Impact factor: 4.897

4.  Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations.

Authors:  W Yu; M Clyne; M J Khoury; M Gwinn
Journal:  Bioinformatics       Date:  2009-10-27       Impact factor: 6.937

Review 5.  Finding common susceptibility variants for complex disease: past, present and future.

Authors:  Kalliope Panoutsopoulou; Eleftheria Zeggini
Journal:  Brief Funct Genomic Proteomic       Date:  2009-07-01

6.  Genomewide association studies and human disease.

Authors:  John Hardy; Andrew Singleton
Journal:  N Engl J Med       Date:  2009-04-15       Impact factor: 91.245

7.  A road map for efficient and reliable human genome epidemiology.

Authors:  John P A Ioannidis; Marta Gwinn; Julian Little; Julian P T Higgins; Jonine L Bernstein; Paolo Boffetta; Melissa Bondy; Molly S Bray; Paul E Brenchley; Patricia A Buffler; Juan Pablo Casas; Anand Chokkalingam; John Danesh; George Davey Smith; Siobhan Dolan; Ross Duncan; Nelleke A Gruis; Patricia Hartge; Mia Hashibe; David J Hunter; Marjo-Riitta Jarvelin; Beatrice Malmer; Demetrius M Maraganore; Julia A Newton-Bishop; Thomas R O'Brien; Gloria Petersen; Elio Riboli; Georgia Salanti; Daniela Seminara; Liam Smeeth; Emanuela Taioli; Nic Timpson; Andre G Uitterlinden; Paolo Vineis; Nick Wareham; Deborah M Winn; Ron Zimmern; Muin J Khoury
Journal:  Nat Genet       Date:  2006-01       Impact factor: 38.330

8.  GAPscreener: an automatic tool for screening human genetic association literature in PubMed using the support vector machine technique.

Authors:  Wei Yu; Melinda Clyne; Siobhan M Dolan; Ajay Yesupriya; Anja Wulf; Tiebin Liu; Muin J Khoury; Marta Gwinn
Journal:  BMC Bioinformatics       Date:  2008-04-22       Impact factor: 3.169

  8 in total
  11 in total

1.  A systematic review of cancer GWAS and candidate gene meta-analyses reveals limited overlap but similar effect sizes.

Authors:  Christine Q Chang; Ajay Yesupriya; Jessica L Rowell; Camilla B Pimentel; Melinda Clyne; Marta Gwinn; Muin J Khoury; Anja Wulf; Sheri D Schully
Journal:  Eur J Hum Genet       Date:  2013-07-24       Impact factor: 4.246

Review 2.  Review of the Gene-Environment Interaction Literature in Cancer: What Do We Know?

Authors:  Naoko I Simonds; Armen A Ghazarian; Camilla B Pimentel; Sheri D Schully; Gary L Ellison; Elizabeth M Gillanders; Leah E Mechanic
Journal:  Genet Epidemiol       Date:  2016-04-07       Impact factor: 2.135

3.  Genetic variants in DNA repair pathway genes and risk of esophageal squamous cell carcinoma and gastric adenocarcinoma in a Chinese population.

Authors:  Wen-Qing Li; Nan Hu; Paula L Hyland; Ying Gao; Zhao-Ming Wang; Kai Yu; Hua Su; Chao-Yu Wang; Le-Min Wang; Stephen J Chanock; Laurie Burdett; Ti Ding; You-Lin Qiao; Jin-Hu Fan; Yuan Wang; Yi Xu; Jian-Xin Shi; Fangyi Gu; William Wheeler; Xiao-Qin Xiong; Carol Giffen; Margaret A Tucker; Sanford M Dawsey; Neal D Freedman; Christian C Abnet; Alisa M Goldstein; Philip R Taylor
Journal:  Carcinogenesis       Date:  2013-03-15       Impact factor: 4.944

4.  Phenotype-Genotype Integrator (PheGenI): synthesizing genome-wide association study (GWAS) data with existing genomic resources.

Authors:  Erin M Ramos; Douglas Hoffman; Heather A Junkins; Donna Maglott; Lon Phan; Stephen T Sherry; Mike Feolo; Lucia A Hindorff
Journal:  Eur J Hum Genet       Date:  2013-05-22       Impact factor: 4.246

5.  Incorporation of personal single nucleotide polymorphism (SNP) data into a national level electronic health record for disease risk assessment, part 1: an overview of requirements.

Authors:  Timur Beyan; Yeşim Aydın Son
Journal:  JMIR Med Inform       Date:  2014-07-24

6.  SomamiR: a database for somatic mutations impacting microRNA function in cancer.

Authors:  Anindya Bhattacharya; Jesse D Ziebarth; Yan Cui
Journal:  Nucleic Acids Res       Date:  2012-11-24       Impact factor: 16.971

7.  SIDD: a semantically integrated database towards a global view of human disease.

Authors:  Liang Cheng; Guohua Wang; Jie Li; Tianjiao Zhang; Peigang Xu; Yadong Wang
Journal:  PLoS One       Date:  2013-10-11       Impact factor: 3.240

Review 8.  A review of cancer risk prediction models with genetic variants.

Authors:  Xuexia Wang; Michael J Oldani; Xingwang Zhao; Xiaohui Huang; Dajun Qian
Journal:  Cancer Inform       Date:  2014-09-21

9.  SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.

Authors:  Anindya Bhattacharya; Yan Cui
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

Review 10.  Genomics era and complex disorders: Implications of GWAS with special reference to coronary artery disease, type 2 diabetes mellitus, and cancers.

Authors:  R Pranavchand; B M Reddy
Journal:  J Postgrad Med       Date:  2016 Jul-Sep       Impact factor: 1.476

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