Literature DB >> 21487001

A mathematical model for adaptive prediction of environmental changes by microorganisms.

Amir Mitchell1, Yitzhak Pilpel.   

Abstract

Survival in natural habitats selects for microorganisms that are well-adapted to a wide range of conditions. Recent studies revealed that cells evolved innovative response strategies that extend beyond merely sensing a given stimulus and responding to it on encounter. A diversity of microorganisms, including Escherichia coli, Vibrio cholerae, and several yeast species, were shown to use a predictive regulation strategy that uses the appearance of one stimulus as a cue for the likely arrival of a subsequent one. A better understanding of such a predictive strategy requires elucidating the interplay between key biological and environmental forces. Here, we describe a mathematical framework to address this challenge. We base this framework on experimental systems featuring early preparation to either a stress or an exposure to improvement in the growth medium. Our model calculates the fitness advantage originating under each regulation strategy in a given habitat. We conclude that, although a predictive response strategy might by advantageous under some ecologies, its costs might exceed the benefit in others. The combined theoretical-experimental treatment presented here helps assess the potential of natural ecologies to support a predictive behavior.

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Year:  2011        PMID: 21487001      PMCID: PMC3084127          DOI: 10.1073/pnas.1019754108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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Authors:  Brice Enjalbert; André Nantel; Malcolm Whiteway
Journal:  Mol Biol Cell       Date:  2003-04       Impact factor: 4.138

6.  Genomic expression programs in the response of yeast cells to environmental changes.

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Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

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9.  Transport by the lactose permease of Escherichia coli as the basis of lactose killing.

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Journal:  EMBO J       Date:  1992-06       Impact factor: 11.598

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  23 in total

Review 1.  Phenotypic plasticity in evolutionary rescue experiments.

Authors:  Luis-Miguel Chevin; Romain Gallet; Richard Gomulkiewicz; Robert D Holt; Simon Fellous
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-19       Impact factor: 6.237

2.  Primed to be strong, primed to be fast: modeling benefits of microbial stress responses.

Authors:  Felix Wesener; Britta Tietjen
Journal:  FEMS Microbiol Ecol       Date:  2019-08-01       Impact factor: 4.194

Review 3.  Constraints, Trade-offs and the Currency of Fitness.

Authors:  Luis Acerenza
Journal:  J Mol Evol       Date:  2016-02-26       Impact factor: 2.395

4.  Response of single bacterial cells to stress gives rise to complex history dependence at the population level.

Authors:  Roland Mathis; Martin Ackermann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-09       Impact factor: 11.205

5.  A Peptide Derived from GAPDH Enhances Resistance to DNA Damage in Saccharomyces cerevisiae Cells.

Authors:  Xi Zhao; Xianqiang Lian; Yan Liu; Liyan Zhou; Bian Wu; Yu V Fu
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

Review 6.  Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks.

Authors:  Yann S Dufour; Timothy J Donohue
Journal:  Adv Microb Physiol       Date:  2012       Impact factor: 3.517

Review 7.  Cellular perception and misperception: Internal models for decision-making shaped by evolutionary experience.

Authors:  Amir Mitchell; Wendell Lim
Journal:  Bioessays       Date:  2016-07-27       Impact factor: 4.345

8.  Constitutive versus responsive gene expression strategies for growth in changing environments.

Authors:  Nico Geisel
Journal:  PLoS One       Date:  2011-11-30       Impact factor: 3.240

Review 9.  Stress Adaptation.

Authors:  Alistair J P Brown; Leah E Cowen; Antonio di Pietro; Janet Quinn
Journal:  Microbiol Spectr       Date:  2017-07

10.  Indirect and suboptimal control of gene expression is widespread in bacteria.

Authors:  Morgan N Price; Adam M Deutschbauer; Jeffrey M Skerker; Kelly M Wetmore; Troy Ruths; Jordan S Mar; Jennifer V Kuehl; Wenjun Shao; Adam P Arkin
Journal:  Mol Syst Biol       Date:  2013-04-16       Impact factor: 11.429

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