Literature DB >> 21486881

Rank-based spatial clustering: an algorithm for rapid outbreak detection.

Jialan Que1, Fu-Chiang Tsui.   

Abstract

OBJECTIVE: Public health surveillance requires outbreak detection algorithms with computational efficiency sufficient to handle the increasing volume of disease surveillance data. In response to this need, the authors propose a spatial clustering algorithm, rank-based spatial clustering (RSC), that detects rapidly infectious but non-contagious disease outbreaks.
DESIGN: The authors compared the outbreak-detection performance of RSC with that of three well established algorithms-the wavelet anomaly detector (WAD), the spatial scan statistic (KSS), and the Bayesian spatial scan statistic (BSS)-using real disease surveillance data on to which they superimposed simulated disease outbreaks. MEASUREMENTS: The following outbreak-detection performance metrics were measured: receiver operating characteristic curve, activity monitoring operating curve curve, cluster positive predictive value, cluster sensitivity, and algorithm run time.
RESULTS: RSC was computationally efficient. It outperformed the other two spatial algorithms in terms of detection timeliness, and outbreak localization. RSC also had overall better timeliness than the time-series algorithm WAD at low false alarm rates.
CONCLUSION: RSC is an ideal algorithm for analyzing large datasets when the application of other spatial algorithms is not practical. It also allows timely investigation for public health practitioners by providing early detection and well-localized outbreak clusters.

Entities:  

Mesh:

Year:  2011        PMID: 21486881      PMCID: PMC3078668          DOI: 10.1136/amiajnl-2011-000137

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  16 in total

1.  The emerging science of very early detection of disease outbreaks.

Authors:  M M Wagner; F C Tsui; J U Espino; V M Dato; D F Sittig; R A Caruana; L F McGinnis; D W Deerfield; M J Druzdzel; D B Fridsma
Journal:  J Public Health Manag Pract       Date:  2001-11

2.  Detection of outbreaks from time series data using wavelet transform.

Authors:  Jun Zhang; Fu -Chiang Tsui; Michael M Wagner; William R Hogan
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  Evaluation of syndromic surveillance systems--design of an epidemic simulation model.

Authors:  David L Buckeridge; H Burkom; A Moore; J Pavlin; P Cutchis; W Hogan
Journal:  MMWR Suppl       Date:  2004-09-24

4.  Benchmark data and power calculations for evaluating disease outbreak detection methods.

Authors:  Martin Kulldorff; Z Zhang; J Hartman; R Heffernan; L Huang; F Mostashari
Journal:  MMWR Suppl       Date:  2004-09-24

5.  Measuring outbreak-detection performance by using controlled feature set simulations.

Authors:  Kenneth D Mandl; B Reis; C Cassa
Journal:  MMWR Suppl       Date:  2004-09-24

6.  Algorithms for rapid outbreak detection: a research synthesis.

Authors:  David L Buckeridge; Howard Burkom; Murray Campbell; William R Hogan; Andrew W Moore
Journal:  J Biomed Inform       Date:  2005-04       Impact factor: 6.317

7.  A multi-level spatial clustering algorithm for detection of disease outbreaks.

Authors:  Jialan Que; Fu-Chiang Tsui
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

8.  Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach.

Authors:  E R DeLong; D M DeLong; D L Clarke-Pearson
Journal:  Biometrics       Date:  1988-09       Impact factor: 2.571

9.  A space-time permutation scan statistic for disease outbreak detection.

Authors:  Martin Kulldorff; Richard Heffernan; Jessica Hartman; Renato Assunção; Farzad Mostashari
Journal:  PLoS Med       Date:  2005-02-15       Impact factor: 11.069

10.  Technical description of RODS: a real-time public health surveillance system.

Authors:  Fu-Chiang Tsui; Jeremy U Espino; Virginia M Dato; Per H Gesteland; Judith Hutman; Michael M Wagner
Journal:  J Am Med Inform Assoc       Date:  2003-06-04       Impact factor: 4.497

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  1 in total

1.  Spatial and Temporal Algorithm Evaluation for Detecting Over-The-Counter Thermometer Sale Increases during 2009 H1N1 Pandemic.

Authors:  Jialan Que; Fu-Chiang Tsui
Journal:  Online J Public Health Inform       Date:  2012-05-17
  1 in total

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