Literature DB >> 21482101

Evolution and disorder.

Celeste J Brown1, Audra K Johnson, A Keith Dunker, Gary W Daughdrill.   

Abstract

The evolution of disordered proteins or regions of proteins differs from that of ordered proteins because of the differences in their sequence composition, intramolecular contacts, and function. Recent assessments of disordered protein evolution at the sequence, structural, and functional levels support this hypothesis. Disordered proteins have a different pattern of accepted point mutations, exhibit higher rates of insertions and deletions, and generally, but not always, evolve more rapidly than ordered proteins. Even with these high rates of sequence evolution, a few examples have shown that disordered proteins maintain their flexibility under physiological conditions, and it is hypothesized that they maintain specific structural ensembles.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21482101      PMCID: PMC3112239          DOI: 10.1016/j.sbi.2011.02.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  50 in total

1.  Why are "natively unfolded" proteins unstructured under physiologic conditions?

Authors:  V N Uversky; J R Gillespie; A L Fink
Journal:  Proteins       Date:  2000-11-15

Review 2.  Coupling of folding and binding for unstructured proteins.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Curr Opin Struct Biol       Date:  2002-02       Impact factor: 6.809

3.  Intrinsic disorder and protein function.

Authors:  A Keith Dunker; Celeste J Brown; J David Lawson; Lilia M Iakoucheva; Zoran Obradović
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

Review 4.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

5.  Evolutionary rate heterogeneity in proteins with long disordered regions.

Authors:  Celeste J Brown; Sachiko Takayama; Andrew M Campen; Pam Vise; Thomas W Marshall; Christopher J Oldfield; Christopher J Williams; A Keith Dunker
Journal:  J Mol Evol       Date:  2002-07       Impact factor: 2.395

Review 6.  Intrinsically unstructured proteins.

Authors:  Peter Tompa
Journal:  Trends Biochem Sci       Date:  2002-10       Impact factor: 13.807

Review 7.  Intrinsically unstructured proteins evolve by repeat expansion.

Authors:  Peter Tompa
Journal:  Bioessays       Date:  2003-09       Impact factor: 4.345

8.  Intrinsic disorder in cell-signaling and cancer-associated proteins.

Authors:  Lilia M Iakoucheva; Celeste J Brown; J David Lawson; Zoran Obradović; A Keith Dunker
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

9.  Intrinsic protein disorder in complete genomes.

Authors:  A K Dunker; Z Obradovic; P Romero; E C Garner; C J Brown
Journal:  Genome Inform Ser Workshop Genome Inform       Date:  2000

10.  Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.

Authors:  Christian Schaefer; Avner Schlessinger; Burkhard Rost
Journal:  Bioinformatics       Date:  2010-01-16       Impact factor: 6.937

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  120 in total

Review 1.  Small-molecule inhibitors of the Myc oncoprotein.

Authors:  Steven Fletcher; Edward V Prochownik
Journal:  Biochim Biophys Acta       Date:  2014-03-19

2.  Reductive evolution of proteomes and protein structures.

Authors:  Minglei Wang; Charles G Kurland; Gustavo Caetano-Anollés
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

3.  Comparative laboratory evolution of ordered and disordered enzymes.

Authors:  Cindy Schulenburg; Yvonne Stark; Matthias Künzle; Donald Hilvert
Journal:  J Biol Chem       Date:  2015-02-19       Impact factor: 5.157

4.  Concomitant disorder and high-affinity zinc binding in the human zinc- and iron-regulated transport protein 4 intracellular loop.

Authors:  Elizabeth M Bafaro; Mark W Maciejewski; Jeffrey C Hoch; Robert E Dempski
Journal:  Protein Sci       Date:  2019-03-12       Impact factor: 6.725

Review 5.  The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Authors:  Rajeswari Appadurai; Vladimir N Uversky; Anand Srivastava
Journal:  J Membr Biol       Date:  2019-05-28       Impact factor: 1.843

6.  Estimating the Influence of Physicochemical and Biochemical Property Indexes on Selection for Amino Acids Usage in Eukaryotic Cells.

Authors:  Giovani B Fogalli; Sergio R P Line
Journal:  J Mol Evol       Date:  2021-03-24       Impact factor: 2.395

7.  How disordered is my protein and what is its disorder for? A guide through the "dark side" of the protein universe.

Authors:  Philippe Lieutaud; François Ferron; Alexey V Uversky; Lukasz Kurgan; Vladimir N Uversky; Sonia Longhi
Journal:  Intrinsically Disord Proteins       Date:  2016-12-21

8.  How bacteria survive an acid trip.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

9.  Structure prediction and analysis of DNA transposon and LINE retrotransposon proteins.

Authors:  György Abrusán; Yang Zhang; András Szilágyi
Journal:  J Biol Chem       Date:  2013-03-25       Impact factor: 5.157

Review 10.  The Tail That Wags the Dog: How the Disordered C-Terminal Domain Controls the Transcriptional Activities of the p53 Tumor-Suppressor Protein.

Authors:  Oleg Laptenko; David R Tong; James Manfredi; Carol Prives
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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