Literature DB >> 21476050

Theoretical investigation of the first-shell mechanism of acetylene hydration catalyzed by a biomimetic tungsten complex.

Yan-Fang Liu1, Rong-Zhen Liao, Wan-Jian Ding, Jian-Guo Yu, Ruo-Zhuang Liu.   

Abstract

The reaction mechanism of the hydration of acetylene to acetaldehyde catalyzed by [W(IV)O(mnt)(2)](2-) (where mnt(2-) is 1,2-dicyanoethylenedithiolate) is studied using density functional theory. Both the uncatalyzed and the catalyzed reaction are considered to find out the origin of the catalysis. Three different models are investigated, in which an aquo, a hydroxo, or an oxo coordinates to the tungsten center. A first-shell mechanism is suggested, similarly to recent calculations on tungsten-dependent acetylene hydratase. The acetylene substrate first coordinates to the tungsten center in an η(2) fashion. Then, the tungsten-bound hydroxide activates a water molecule to perform a nucleophilic attack on the acetylene, resulting in the formation of a vinyl anion and a tungsten-bound water molecule. This is followed by proton transfer from the tungsten-bound water molecule to the newly formed vinyl anion intermediate. Tungsten is directly involved in the reaction by binding and activating acetylene and providing electrostatic stabilization to the transition states and intermediates. Three other mechanisms are also considered, but the associated energetic barriers were found to be very high, ruling out those possibilities.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21476050     DOI: 10.1007/s00775-011-0775-x

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  36 in total

1.  Ab initio modeling of ethylbenzene dehydrogenase reaction mechanism.

Authors:  Maciej Szaleniec; Tomasz Borowski; Karola Schühle; Malgorzata Witko; Johann Heider
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

Review 2.  Mechanisms of metalloenzymes studied by quantum chemical methods.

Authors:  Per E M Siegbahn
Journal:  Q Rev Biophys       Date:  2003-02       Impact factor: 5.318

3.  Structure of the non-redox-active tungsten/[4Fe:4S] enzyme acetylene hydratase.

Authors:  Grazyna B Seiffert; G Matthias Ullmann; Albrecht Messerschmidt; Bernhard Schink; Peter M H Kroneck; Oliver Einsle
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-27       Impact factor: 11.205

4.  Reductive half-reaction of aldehyde oxidoreductase toward acetaldehyde: a combined QM/MM study.

Authors:  Sebastian Metz; Dongqi Wang; Walter Thiel
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

5.  A DFT study of the mechanism of Ni superoxide dismutase (NiSOD): role of the active site cysteine-6 residue in the oxidative half-reaction.

Authors:  Rajeev Prabhakar; Keiji Morokuma; Djamaladdin G Musaev
Journal:  J Comput Chem       Date:  2006-09       Impact factor: 3.376

6.  Theoretical study of the effect of water in the process of proton transfer of glycinamide.

Authors:  Yong Sun; Haoran Li; Wanchun Liang; Shijun Han
Journal:  J Phys Chem B       Date:  2005-03-31       Impact factor: 2.991

7.  Mechanism of the hydration of carbon dioxide: direct participation of H2O versus microsolvation.

Authors:  Minh Tho Nguyen; Myrna H Matus; Virgil E Jackson; Thi Ngan Vu; James R Rustad; David A Dixon
Journal:  J Phys Chem A       Date:  2008-09-25       Impact factor: 2.781

8.  Dipeptide hydrolysis by the dinuclear zinc enzyme human renal dipeptidase: mechanistic insights from DFT calculations.

Authors:  Rong-Zhen Liao; Fahmi Himo; Jian-Guo Yu; Ruo-Zhuang Liu
Journal:  J Inorg Biochem       Date:  2009-10-01       Impact factor: 4.155

9.  Water-assisted transamination of glycine and formaldehyde.

Authors:  Rong-Zhen Liao; Wan-Jian Ding; Jian-Guo Yu; Wei-Hai Fang; Ruo-Zhuang Liu
Journal:  J Phys Chem A       Date:  2007-03-30       Impact factor: 2.781

10.  Deamidation of asparagine residues: direct hydrolysis versus succinimide-mediated deamidation mechanisms.

Authors:  Saron Catak; Gérald Monard; Viktorya Aviyente; Manuel F Ruiz-López
Journal:  J Phys Chem A       Date:  2009-02-12       Impact factor: 2.781

View more
  8 in total

1.  Why is the molybdenum-substituted tungsten-dependent formaldehyde ferredoxin oxidoreductase not active? A quantum chemical study.

Authors:  Rong-Zhen Liao
Journal:  J Biol Inorg Chem       Date:  2012-11-25       Impact factor: 3.358

2.  An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea.

Authors:  Steffen Buessecker; Marike Palmer; Dengxun Lai; Joshua Dimapilis; Xavier Mayali; Damon Mosier; Jian-Yu Jiao; Daniel R Colman; Lisa M Keller; Emily St John; Michelle Miranda; Cristina Gonzalez; Lizett Gonzalez; Christian Sam; Christopher Villa; Madeline Zhuo; Nicholas Bodman; Fernando Robles; Eric S Boyd; Alysia D Cox; Brian St Clair; Zheng-Shuang Hua; Wen-Jun Li; Anna-Louise Reysenbach; Matthew B Stott; Peter K Weber; Jennifer Pett-Ridge; Anne E Dekas; Brian P Hedlund; Jeremy A Dodsworth
Journal:  Nat Commun       Date:  2022-06-30       Impact factor: 17.694

Review 3.  Acetylene hydratase: a non-redox enzyme with tungsten and iron-sulfur centers at the active site.

Authors:  Peter M H Kroneck
Journal:  J Biol Inorg Chem       Date:  2016-01-20       Impact factor: 3.358

4.  Theoretical studies on the reaction mechanism of PP1 and the effects of different oxidation states of the Mn-Mn center on the mechanism.

Authors:  Hao Zhang; Yingying Ma; Kai Liu; Jian-Guo Yu
Journal:  J Biol Inorg Chem       Date:  2013-03-06       Impact factor: 3.358

5.  Is the tungsten(IV) complex (NEt4)2[WO(mnt)2] a functional analogue of acetylene hydratase?

Authors:  Matthias Schreyer; Lukas Hintermann
Journal:  Beilstein J Org Chem       Date:  2017-11-02       Impact factor: 2.883

6.  Activation and Photoinduced Release of Alkynes on a Biomimetic Tungsten Center: The Photochemical Behavior of the W-S-Phoz System.

Authors:  Lydia M Peschel; Carina Vidovič; Ferdinand Belaj; Dmytro Neshchadin; Nadia C Mösch-Zanetti
Journal:  Chemistry       Date:  2019-02-18       Impact factor: 5.236

7.  Soft Scorpionate Hydridotris(2-mercapto-1-methylimidazolyl) borate) Tungsten-Oxido and -Sulfido Complexes as Acetylene Hydratase Models.

Authors:  Carina Vidovič; Ferdinand Belaj; Nadia C Mösch-Zanetti
Journal:  Chemistry       Date:  2020-09-07       Impact factor: 5.236

Review 8.  Inspired by Nature-Functional Analogues of Molybdenum and Tungsten-Dependent Oxidoreductases.

Authors:  Sebastian Pätsch; Jevy V Correia; Benedict J Elvers; Mareile Steuer; Carola Schulzke
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.