Literature DB >> 12643044

Mechanisms of metalloenzymes studied by quantum chemical methods.

Per E M Siegbahn1.   

Abstract

The study of metalloenzymes using quantum chemical methods of high accuracy is a relatively new field. During the past five years a quite good understanding has been reached concerning the methods and models to be used for these systems. For systems containing transition metals hybrid density functional methods have proven both accurate and computationally efficient. A background on these methods and the accuracy achieved in benchmark tests are given first in this review. The rest of the review describes examples of studies on different metalloenzymes. Most of these examples describe mechanisms where dioxygen is either formed, as in photosystem II, or cleaved as in many other enzymes like cytochrome c oxidase, ribonucleotide reductase, methane mono-oxygenase and tyrosinase. In the descriptions below high emphasis is put on the actual determination of the transition states, which are the key points determining the mechanisms.

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Year:  2003        PMID: 12643044     DOI: 10.1017/s0033583502003827

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  25 in total

1.  The catalytic cycle of catechol oxidase.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2004-06-05       Impact factor: 3.358

2.  Dehydration of ribonucleotides catalyzed by ribonucleotide reductase: the role of the enzyme.

Authors:  Nuno M F S A Cerqueira; Pedro Alexandrino Fernandes; Leif A Eriksson; Maria João Ramos
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

3.  The performance of hybrid DFT for mechanisms involving transition metal complexes in enzymes.

Authors:  Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

4.  Theoretical study of the catalytic mechanism of catechol oxidase.

Authors:  Mireia Güell; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2007-09-20       Impact factor: 3.358

5.  Structural Model Studies for the High-Valent Intermediate Q of Methane Monooxygenase from Broken-Symmetry Density Functional Calculations.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Inorganica Chim Acta       Date:  2008-03-03       Impact factor: 2.545

6.  Electrostatic effects on proton coupled electron transfer in oxomanganese complexes inspired by the oxygen-evolving complex of photosystem II.

Authors:  Muhamed Amin; Leslie Vogt; Serguei Vassiliev; Ivan Rivalta; Mohammad M Sultan; Doug Bruce; Gary W Brudvig; Victor S Batista; M R Gunner
Journal:  J Phys Chem B       Date:  2013-05-15       Impact factor: 2.991

7.  Quantum cluster size and solvent polarity effects on the geometries and Mössbauer properties of the active site model for ribonucleotide reductase intermediate X: a density functional theory study.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Theor Chem Acc       Date:  2010-03       Impact factor: 1.702

8.  Complexes of arzanol with a Cu2+ ion: a DFT study.

Authors:  Liliana Mammino
Journal:  J Mol Model       Date:  2017-09-12       Impact factor: 1.810

9.  DFT calculations of comparative energetics and ENDOR/Mössbauer properties for two protonation states of the iron dimer cluster of ribonucleotide reductase intermediate X.

Authors:  Wen-Ge Han; Louis Noodleman
Journal:  Dalton Trans       Date:  2009-06-23       Impact factor: 4.390

Review 10.  Density functional theory.

Authors:  Maylis Orio; Dimitrios A Pantazis; Frank Neese
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

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