Literature DB >> 21470902

Biosynthesis and function of tRNA modifications in Archaea.

Gabriela Phillips1, Valérie de Crécy-Lagard.   

Abstract

tRNA modifications are important for decoding, translation accuracy, and structural integrity of tRNAs. Archaeal tRNAs contain at least 47 different tRNA modifications, some of them, including archaeosine, agmatidine, and mimG, are specific to the archaeal domain. The biosynthetic pathways for these complex signature modifications have recently been elucidated and are extensively described in this review. Archaeal organisms still lag Escherichia coli and Saccharomyces cerevisiae in terms of genetic characterization and in vivo function of tRNA modifications. However, recent advances in the model Haloferax volcanii, described here, should allow closing this gap soon. Consequently, an update on experimental characterizations of archaeal tRNA modification genes and proteins is given to set the stage for future work in this field.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21470902     DOI: 10.1016/j.mib.2011.03.001

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  26 in total

Review 1.  Distribution and frequencies of post-transcriptional modifications in tRNAs.

Authors:  Magdalena A Machnicka; Anna Olchowik; Henri Grosjean; Janusz M Bujnicki
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

2.  Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis.

Authors:  Yuchen Liu; Xiang Zhu; Akiyoshi Nakamura; Ron Orlando; Dieter Söll; William B Whitman
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

Review 3.  Genomics and biology of Rudiviruses, a model for the study of virus-host interactions in Archaea.

Authors:  David Prangishvili; Eugene V Koonin; Mart Krupovic
Journal:  Biochem Soc Trans       Date:  2013-02-01       Impact factor: 5.407

Review 4.  Transfer RNA modifications: nature's combinatorial chemistry playground.

Authors:  Jane E Jackman; Juan D Alfonzo
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-11-08       Impact factor: 9.957

5.  Unexpected expansion of tRNA substrate recognition by the yeast m1G9 methyltransferase Trm10.

Authors:  William E Swinehart; Jeremy C Henderson; Jane E Jackman
Journal:  RNA       Date:  2013-06-21       Impact factor: 4.942

6.  Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation, and biology of Haloferax volcanii.

Authors:  Jörg Soppa
Journal:  Archaea       Date:  2011-11-30       Impact factor: 3.273

Review 7.  Naturally occurring modified ribonucleosides.

Authors:  Phillip J McCown; Agnieszka Ruszkowska; Charlotte N Kunkler; Kurtis Breger; Jacob P Hulewicz; Matthew C Wang; Noah A Springer; Jessica A Brown
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-04-16       Impact factor: 9.349

Review 8.  The queuine micronutrient: charting a course from microbe to man.

Authors:  Claire Fergus; Dominic Barnes; Mashael A Alqasem; Vincent P Kelly
Journal:  Nutrients       Date:  2015-04-15       Impact factor: 5.717

9.  Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.

Authors:  Sadeem Ahmad; Sowndarya Muthukumar; Santosh Kumar Kuncha; Satya Brata Routh; Antony S K Yerabham; Tanweer Hussain; Venu Kamarthapu; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  Nat Commun       Date:  2015-06-26       Impact factor: 14.919

10.  The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL.

Authors:  Ru-Juan Liu; Mi Zhou; Zhi-Peng Fang; Meng Wang; Xiao-Long Zhou; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2013-06-26       Impact factor: 16.971

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