Literature DB >> 21468231

Topoisomerases, chromatin and transcription termination.

Mickaël Durand-Dubief1, J Peter Svensson, Jenna Persson, Karl Ekwall.   

Abstract

In eukaryotes transcription is complicated by the DNA being packed in nucleosomes and by supercoils induced by opening of the DNA double helix during elongation. Here we discuss our recent genome-wide work regarding topoisomerases and their role in chromatin remodeling during the transcription cycle and we report a novel function for topoisomerases in transcription termination.

Year:  2011        PMID： 21468231      PMCID： PMC3062396          DOI： 10.4161/trns.2.2.14411

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  33 in total

Review 1.  DNA topoisomerases: structure, function, and mechanism.

Authors:  J J Champoux
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

2.  Localized torsional tension in the DNA of human cells.

Authors:  M Ljungman; P C Hanawalt
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

3.  The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing.

Authors:  T A Blank; P B Becker
Journal:  J Mol Biol       Date:  1996-07-05       Impact factor: 5.469

4.  Function of DNA topoisomerases as replication swivels in Saccharomyces cerevisiae.

Authors:  R A Kim; J C Wang
Journal:  J Mol Biol       Date:  1989-07-20       Impact factor: 5.469

5.  Topoisomerase I regulates open chromatin and controls gene expression in vivo.

Authors:  Mickaël Durand-Dubief; Jenna Persson; Ulrika Norman; Edgar Hartsuiker; Karl Ekwall
Journal:  EMBO J       Date:  2010-06-04       Impact factor: 11.598

6.  Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.

Authors:  Alexandra B Lantermann; Tobias Straub; Annelie Strålfors; Guo-Cheng Yuan; Karl Ekwall; Philipp Korber
Journal:  Nat Struct Mol Biol       Date:  2010-01-31       Impact factor: 15.369

7.  Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.

Authors:  Steven West; Natalia Gromak; Nick J Proudfoot
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

8.  The functional response of upstream DNA to dynamic supercoiling in vivo.

Authors:  Fedor Kouzine; Suzanne Sanford; Zichrini Elisha-Feil; David Levens
Journal:  Nat Struct Mol Biol       Date:  2008-01-13       Impact factor: 15.369

9.  Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Authors:  Nevan J Krogan; Gerard Cagney; Haiyuan Yu; Gouqing Zhong; Xinghua Guo; Alexandr Ignatchenko; Joyce Li; Shuye Pu; Nira Datta; Aaron P Tikuisis; Thanuja Punna; José M Peregrín-Alvarez; Michael Shales; Xin Zhang; Michael Davey; Mark D Robinson; Alberto Paccanaro; James E Bray; Anthony Sheung; Bryan Beattie; Dawn P Richards; Veronica Canadien; Atanas Lalev; Frank Mena; Peter Wong; Andrei Starostine; Myra M Canete; James Vlasblom; Samuel Wu; Chris Orsi; Sean R Collins; Shamanta Chandran; Robin Haw; Jennifer J Rilstone; Kiran Gandi; Natalie J Thompson; Gabe Musso; Peter St Onge; Shaun Ghanny; Mandy H Y Lam; Gareth Butland; Amin M Altaf-Ul; Shigehiko Kanaya; Ali Shilatifard; Erin O'Shea; Jonathan S Weissman; C James Ingles; Timothy R Hughes; John Parkinson; Mark Gerstein; Shoshana J Wodak; Andrew Emili; Jack F Greenblatt
Journal:  Nature       Date:  2006-03-22       Impact factor: 49.962

10.  Isolation of type I and II DNA topoisomerase mutants from fission yeast: single and double mutants show different phenotypes in cell growth and chromatin organization.

Authors:  T Uemura; M Yanagida
Journal:  EMBO J       Date:  1984-08       Impact factor: 11.598
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  14 in total

1.  A critical role for topoisomerase IIb and DNA double strand breaks in transcription.

Authors:  Stuart K Calderwood
Journal:  Transcription       Date:  2016-04-21

Review 2.  Epigenetic Regulation of Chromatin States in Schizosaccharomyces pombe.

Authors:  Robin C Allshire; Karl Ekwall
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-07-01       Impact factor: 10.005

3.  DNA topoisomerase I affects polycomb group protein-mediated epigenetic regulation and plant development by altering nucleosome distribution in Arabidopsis.

Authors:  Xigang Liu; Lei Gao; Thanh Theresa Dinh; Ting Shi; Dongming Li; Ruozhong Wang; Lin Guo; Langtao Xiao; Xuemei Chen
Journal:  Plant Cell       Date:  2014-07-28       Impact factor: 11.277

4.  Cell-cycle specific association of transcription factors and RNA polymerase ii with the human β-globin gene locus.

Authors:  Michael Rosenberg; Alex Xiucheng Fan; I-Ju Lin; Shermi Y Liang; Jörg Bungert
Journal:  J Cell Biochem       Date:  2013-09       Impact factor: 4.429

5.  Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis.

Authors:  Laia Sadeghi; Carolina Bonilla; Annelie Strålfors; Karl Ekwall; J Peter Svensson
Journal:  PLoS Comput Biol       Date:  2011-08-25       Impact factor: 4.475

Review 6.  Collaboration through chromatin: motors of transcription and chromatin structure.

Authors:  Nathan Gamarra; Geeta J Narlikar
Journal:  J Mol Biol       Date:  2021-02-05       Impact factor: 6.151

7.  Transcription-generated torsional stress destabilizes nucleosomes.

Authors:  Sheila S Teves; Steven Henikoff
Journal:  Nat Struct Mol Biol       Date:  2013-12-08       Impact factor: 15.369

8.  DNA topoisomerase III localizes to centromeres and affects centromeric CENP-A levels in fission yeast.

Authors:  Ulrika Norman-Axelsson; Mickaël Durand-Dubief; Punit Prasad; Karl Ekwall
Journal:  PLoS Genet       Date:  2013-03-14       Impact factor: 5.917

9.  Genome-wide transcriptional effects of the anti-cancer agent camptothecin.

Authors:  Artur Veloso; Benjamin Biewen; Michelle T Paulsen; Nathan Berg; Leonardo Carmo de Andrade Lima; Jayendra Prasad; Karan Bedi; Brian Magnuson; Thomas E Wilson; Mats Ljungman
Journal:  PLoS One       Date:  2013-10-23       Impact factor: 3.240

10.  DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis.

Authors:  Thanh Theresa Dinh; Lei Gao; Xigang Liu; Dongming Li; Shengben Li; Yuanyuan Zhao; Michael O'Leary; Brandon Le; Robert J Schmitz; Pablo A Manavella; Pablo Manavella; Shaofang Li; Detlef Weigel; Olga Pontes; Joseph R Ecker; Xuemei Chen
Journal:  PLoS Genet       Date:  2014-07-03       Impact factor: 5.917
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