Literature DB >> 21466190

Michaelis-Menten equation and detailed balance in enzymatic networks.

Jianshu Cao1.   

Abstract

Many enzymatic reactions in biochemistry are far more complex than the celebrated Michaelis-Menten scheme, but the observed turnover rate often obeys the hyperbolic dependence on the substrate concentration, a relation established almost a century ago for the simple Michaelis-Menten mechanism. To resolve the longstanding puzzle, we apply the flux balance method to predict the functional form of the substrate dependence in the mean turnover time of complex enzymatic reactions and identify detailed balance (i.e., the lack of unbalanced conformational current) as a sufficient condition for the Michaelis-Menten equation to describe the substrate concentration dependence of the turnover rate in an enzymatic network. This prediction can be verified in single-molecule event-averaged measurements using the recently proposed signatures of detailed balance violations. The finding helps analyze recent single-molecule studies of enzymatic networks and can be applied to other external variables, such as force-dependence and voltage-dependence.

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Year:  2011        PMID: 21466190     DOI: 10.1021/jp110924w

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  16 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

2.  Origins of concentration dependence of waiting times for single-molecule fluorescence binding.

Authors:  Jin Yang; John E Pearson
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4.  Michaelis-Menten relations for complex enzymatic networks.

Authors:  Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2011-04-21       Impact factor: 3.488

5.  Probing single-molecule enzyme active-site conformational state intermittent coherence.

Authors:  Yufan He; Yue Li; Saptarshi Mukherjee; Yan Wu; Honggao Yan; H Peter Lu
Journal:  J Am Chem Soc       Date:  2011-08-19       Impact factor: 15.419

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Authors:  Ruijie D Teo; Benjamin J G Rousseau; Elizabeth R Smithwick; Rosa Di Felice; David N Beratan; Agostino Migliore
Journal:  Chem       Date:  2018-10-25       Impact factor: 22.804

7.  Structural conditions on complex networks for the Michaelis-Menten input-output response.

Authors:  Felix Wong; Annwesha Dutta; Debashish Chowdhury; Jeremy Gunawardena
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-07       Impact factor: 11.205

8.  Dependence of the Enzymatic Velocity on the Substrate Dissociation Rate.

Authors:  Alexander M Berezhkovskii; Attila Szabo; T Rotbart; M Urbakh; Anatoly B Kolomeisky
Journal:  J Phys Chem B       Date:  2016-12-01       Impact factor: 2.991

9.  Physical constraints on charge transport through bacterial nanowires.

Authors:  Nicholas F Polizzi; Spiros S Skourtis; David N Beratan
Journal:  Faraday Discuss       Date:  2012       Impact factor: 4.008

10.  Role of substrate unbinding in Michaelis-Menten enzymatic reactions.

Authors:  Shlomi Reuveni; Michael Urbakh; Joseph Klafter
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

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