Literature DB >> 21460088

Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.

Tatiana A Vishnivetskaya1, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina del Rio, E Dalin, Hope Tice, David C Bruce, Lynne A Goodwin, Sam Pitluck, E Saunders, Tom Brettin, Chris Detter, Cliff Han, Frank Larimer, Miriam L Land, Loren J Hauser, Nikos C Kyrpides, Galina Ovchinnikova, Sophia Kathariou, Robert F Ramaley, Debora F Rodrigues, Christie Hendrix, Paul Richardson, James M Tiedje.   

Abstract

Here we present the genome of strain Exiguobacterium sp. AT1b, a thermophilic member of the genus Exiguobacterium whose representatives were isolated from various environments along a thermal and physicochemical gradient. This genome was sequenced to be a comparative resource for the study of thermal adaptation with a psychroactive representative of the genus, Exiguobacterium sibiricum strain 255-15, that was previously sequenced by the U.S. Department of Energy's (DOE's) Joint Genome Institute (JGI) (http://genome.ornl.gov/microbial/exig/).

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Year:  2011        PMID: 21460088      PMCID: PMC3133134          DOI: 10.1128/JB.00303-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

1.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Authors:  Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos C Kyrpides
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

2.  The Exiguobacterium genus: biodiversity and biogeography.

Authors:  Tatiana A Vishnivetskaya; Sophia Kathariou; James M Tiedje
Journal:  Extremophiles       Date:  2009-04-19       Impact factor: 2.395

3.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains.

Authors:  Tatiana A Vishnivetskaya; Robin Siletzky; Natalie Jefferies; James M Tiedje; Sophia Kathariou
Journal:  Cryobiology       Date:  2007-02-06       Impact factor: 2.487

7.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

8.  Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov.

Authors:  Debora Frigi Rodrigues; Johan Goris; Tatiana Vishnivetskaya; David Gilichinsky; Michael F Thomashow; James M Tiedje
Journal:  Extremophiles       Date:  2006-02-18       Impact factor: 2.395

9.  Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach.

Authors:  Debora F Rodrigues; Natalia Ivanova; Zhili He; Marianne Huebner; Jizhong Zhou; James M Tiedje
Journal:  BMC Genomics       Date:  2008-11-18       Impact factor: 3.969

  9 in total
  14 in total

1.  Exiguobacterium algae sp. nov. and Exiguobacterium qingdaonense sp. nov., two novel moderately halotolerant bacteria isolated from the coastal algae.

Authors:  Fangming Liu; Yangjie Li; Wenxuan He; Wenqi Wang; Jinshui Zheng; Dechao Zhang
Journal:  Antonie Van Leeuwenhoek       Date:  2021-07-12       Impact factor: 2.271

2.  Characterization of a multiresistant mosaic plasmid from a fish farm Sediment Exiguobacterium sp. isolate reveals aggregation of functional clinic-associated antibiotic resistance genes.

Authors:  Jing Yang; Chao Wang; Jinyu Wu; Li Liu; Gang Zhang; Jie Feng
Journal:  Appl Environ Microbiol       Date:  2013-12-20       Impact factor: 4.792

3.  Growth-dependent catalase localization in Exiguobacterium oxidotolerans T-2-2T reflected by catalase activity of cells.

Authors:  Yoshiko Hanaoka; Fumihiko Takebe; Yoshinobu Nodasaka; Isao Hara; Hidetoshi Matsuyama; Isao Yumoto
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

4.  Draft Genome Sequence of the Polyextremophilic Exiguobacterium sp. Strain S17, Isolated from Hyperarsenic Lakes in the Argentinian Puna.

Authors:  Omar F Ordoñez; Esteban Lanzarotti; Daniel Kurth; Marta F Gorriti; Santiago Revale; Néstor Cortez; Martin P Vazquez; María E Farías; Adrian G Turjanski
Journal:  Genome Announc       Date:  2013-07-25

5.  Complete Genome Sequence of Exiguobacterium sp. Strain MH3, Isolated from Rhizosphere of Lemna minor.

Authors:  Jie Tang; Ying Zhang; Hao Meng; Zhiquan Xue; Jiong Ma
Journal:  Genome Announc       Date:  2013-12-19

Review 6.  Exiguobacterium sp. A1b/GX59 isolated from a patient with community-acquired pneumonia and bacteremia: genomic characterization and literature review.

Authors:  Xingchun Chen; Lijun Wang; Jiali Zhou; Honglong Wu; Dong Li; Yanchao Cui; Binghuai Lu
Journal:  BMC Infect Dis       Date:  2017-07-21       Impact factor: 3.090

7.  Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance.

Authors:  Juan Castro-Severyn; Francisco Remonsellez; Sandro L Valenzuela; Cesar Salinas; Jonathan Fortt; Pablo Aguilar; Coral Pardo-Esté; Cristina Dorador; Raquel Quatrini; Franck Molina; Daniel Aguayo; Eduardo Castro-Nallar; Claudia P Saavedra
Journal:  Front Microbiol       Date:  2017-03-21       Impact factor: 5.640

Review 8.  A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7.

Authors:  Rafael A Baraúna; Dhara Y Freitas; Juliana C Pinheiro; Adriana R C Folador; Artur Silva
Journal:  Proteomes       Date:  2017-02-23

9.  Draft Genome Sequence of Exiguobacterium pavilionensis Strain RW-2, with Wide Thermal, Salinity, and pH Tolerance, Isolated from Modern Freshwater Microbialites.

Authors:  Richard Allen White; Christopher J Grassa; Curtis A Suttle
Journal:  Genome Announc       Date:  2013-08-08

10.  The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions.

Authors:  Ana Gutiérrez-Preciado; Carlos Vargas-Chávez; Mariana Reyes-Prieto; Omar F Ordoñez; Diego Santos-García; Tania Rosas-Pérez; Jorge Valdivia-Anistro; Eria A Rebollar; Andrés Saralegui; Andrés Moya; Enrique Merino; María Eugenia Farías; Amparo Latorre; Valeria Souza
Journal:  PeerJ       Date:  2017-04-19       Impact factor: 2.984

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