Literature DB >> 21458507

Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.

Isabel Margaret1, Anke Becker, Jochen Blom, Ildefonso Bonilla, Alexander Goesmann, Michael Göttfert, Javier Lloret, Virginie Mittard-Runte, Christian Rückert, José E Ruiz-Sainz, José María Vinardell, Stefan Weidner.   

Abstract

Glycine max (soybean) plants can be nodulated by fast-growing rhizobial strains of the genus Sinorhizobium as well as by slow-growing strains clustered in the genus Bradyrhizobium. Fast-growing rhizobia strains with different soybean cultivar specificities have been isolated from Chinese soils and from other geographical regions. Most of these strains have been clustered into the species Sinorhizobium fredii. The S. fredii strain HH103 was isolated from soils of Hubei province, Central China and was first described in 1985. This strain is capable to nodulate American and Asiatic soybean cultivars and many other different legumes and is so far the best studied fast-growing soybean-nodulating strain. Additionally to the chromosome S. fredii HH103 carries five indigenous plasmids. The largest plasmid (pSfrHH103e) harbours genes for the production of diverse surface polysaccharides, such as exopolysaccharides (EPS), lipopolysaccharides (LPS), and capsular polysaccharides (KPS). The second largest plasmid (pSfrHH103d) is a typical symbiotic plasmid (pSym), carrying nodulation and nitrogen fixation genes. The present mini review focuses on symbiotic properties of S. fredii HH103, in particular on nodulation and surface polysaccharides aspects. The model strain S. fredii HH103 was chosen for genomic sequencing, which is currently in progress. First analyses of the draft genome sequence revealed an extensive synteny between the chromosomes of S. fredii HH103 and Rhizobium sp. NGR234.
Copyright © 2011 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21458507     DOI: 10.1016/j.jbiotec.2011.03.016

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  22 in total

1.  Genome sequence of the soybean symbiont Sinorhizobium fredii HH103.

Authors:  Stefan Weidner; Anke Becker; Ildefonso Bonilla; Sebastian Jaenicke; Javier Lloret; Isabel Margaret; Alfred Pühler; José E Ruiz-Sainz; Susanne Schneiker-Bekel; Rafael Szczepanowski; José María Vinardell; Susanne Zehner; Michael Göttfert
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

2.  Phylogenetic diversity of Mesorhizobium in chickpea.

Authors:  Dong Hyun Kim; Mayank Kaashyap; Abhishek Rathore; Roma R Das; Swathi Parupalli; Hari D Upadhyaya; S Gopalakrishnan; Pooran M Gaur; Sarvjeet Singh; Jagmeet Kaur; Mohammad Yasin; Rajeev K Varshney
Journal:  J Biosci       Date:  2014-06       Impact factor: 1.826

3.  The Sinorhizobium (Ensifer) fredii HH103 Nodulation Outer Protein NopI Is a Determinant for Efficient Nodulation of Soybean and Cowpea Plants.

Authors:  Irene Jiménez-Guerrero; Francisco Pérez-Montaño; Carlos Medina; Francisco Javier Ollero; Francisco Javier López-Baena
Journal:  Appl Environ Microbiol       Date:  2017-02-15       Impact factor: 4.792

4.  RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots.

Authors:  Songli Yuan; Rong Li; Shuilian Chen; Haifeng Chen; Chanjuan Zhang; Limiao Chen; Qingnan Hao; Zhihui Shan; Zhonglu Yang; Dezhen Qiu; Xiaojuan Zhang; Xinan Zhou
Journal:  Front Plant Sci       Date:  2016-05-30       Impact factor: 5.753

5.  Genetic Analysis Reveals the Essential Role of Nitrogen Phosphotransferase System Components in Sinorhizobium fredii CCBAU 45436 Symbioses with Soybean and Pigeonpea Plants.

Authors:  Yue Zhen Li; Dan Wang; Xue Ying Feng; Jian Jiao; Wen Xin Chen; Chang Fu Tian
Journal:  Appl Environ Microbiol       Date:  2015-12-18       Impact factor: 4.792

6.  LDSS-P: an advanced algorithm to extract functional short motifs associated with coordinated gene expression.

Authors:  Hiroyuki Ichida; Sharon R Long
Journal:  Nucleic Acids Res       Date:  2016-05-17       Impact factor: 16.971

7.  Structure of the unusual Sinorhizobium fredii HH103 lipopolysaccharide and its role in symbiosis.

Authors:  Flaviana Di Lorenzo; Immacolata Speciale; Alba Silipo; Cynthia Alías-Villegas; Sebastián Acosta-Jurado; Miguel-Ángel Rodríguez-Carvajal; Marta S Dardanelli; Angelo Palmigiano; Domenico Garozzo; José-Enrique Ruiz-Sainz; Antonio Molinaro; José-María Vinardell
Journal:  J Biol Chem       Date:  2020-06-16       Impact factor: 5.157

8.  A set of Lotus japonicus Gifu x Lotus burttii recombinant inbred lines facilitates map-based cloning and QTL mapping.

Authors:  Niels Sandal; Haojie Jin; Dulce Nombre Rodriguez-Navarro; Francisco Temprano; Cristina Cvitanich; Andreas Brachmann; Shusei Sato; Masayoshi Kawaguchi; Satoshi Tabata; Martin Parniske; Jose E Ruiz-Sainz; Stig U Andersen; Jens Stougaard
Journal:  DNA Res       Date:  2012-05-22       Impact factor: 4.458

9.  The Sinorhizobium fredii HH103 lipopolysaccharide is not only relevant at early soybean nodulation stages but also for symbiosome stability in mature nodules.

Authors:  Isabel Margaret; M Mercedes Lucas; Sebastián Acosta-Jurado; Ana M Buendía-Clavería; Elena Fedorova; Ángeles Hidalgo; Miguel A Rodríguez-Carvajal; Dulce N Rodriguez-Navarro; José E Ruiz-Sainz; José M Vinardell
Journal:  PLoS One       Date:  2013-10-01       Impact factor: 3.240

Review 10.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.