Literature DB >> 21452087

Retron Se72 utilizes a unique strategy of the self-priming initiation of reverse transcription.

Lenka Pilousova1, Ivan Rychlik.   

Abstract

Unlike all of the other retrons, the bacterial retron reverse transcriptase RrtE is capable of synthesizing small double-stranded DNA (sdsDNA) from template RNA. In this study, we analyzed the biosynthesis of the sdsDNA by RrtE in detail. We found out that the initiation of reverse transcription was dependent on a novel self-priming mechanism utilizing a free 3'OH of RNA that is reverse-transcribed into sdsDNA. The priming of the sdsDNA synthesis was not dependent on any particular nucleotide being used as a donor of 3'OH (unlike all of the other retrons, which prime from 2'OH of a particular guanosine) or any particular nucleotide being introduced into the sdsDNA first. Due to the relaxed demands for the initiation of reverse transcription, RrtE has the potential to generate dsDNA from different RNA transcripts in vivo.

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Year:  2011        PMID: 21452087     DOI: 10.1007/s00018-011-0671-0

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  23 in total

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Authors:  M Butler; T Goodwin; M Simpson; M Singh; R Poulter
Journal:  J Mol Evol       Date:  2001-03       Impact factor: 2.395

Review 2.  "In the beginning": initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons.

Authors:  Stuart F J Le Grice
Journal:  Biochemistry       Date:  2003-12-16       Impact factor: 3.162

Review 3.  Group II introns: structure, folding and splicing mechanism.

Authors:  Olga Fedorova; Nora Zingler
Journal:  Biol Chem       Date:  2007-07       Impact factor: 3.915

4.  Biosynthesis and structure of stable branched RNA covalently linked to the 5' end of multicopy single-stranded DNA of Stigmatella aurantiaca.

Authors:  T Furuichi; S Inouye; M Inouye
Journal:  Cell       Date:  1987-01-16       Impact factor: 41.582

5.  Yeast lariat debranching enzyme. Substrate and sequence specificity.

Authors:  K Nam; R H Hudson; K B Chapman; K Ganeshan; M J Damha; J D Boeke
Journal:  J Biol Chem       Date:  1994-08-12       Impact factor: 5.157

6.  Repetitive sequences found in the chromosome of the myxobacterium Nannocystis exedens are similar to msDNA: a possible retrotransposition event in bacteria.

Authors:  B C Lampson; S A Rice
Journal:  Mol Microbiol       Date:  1997-02       Impact factor: 3.501

7.  Structural requirements of the RNA precursor for the biosynthesis of the branched RNA-linked multicopy single-stranded DNA of Myxococcus xanthus.

Authors:  M Y Hsu; S Inouye; M Inouye
Journal:  J Biol Chem       Date:  1989-04-15       Impact factor: 5.157

8.  RNA evolution and the origins of life.

Authors:  G F Joyce
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

9.  Retron-Ec107 is inserted into the Escherichia coli genome by replacing a palindromic 34bp intergenic sequence.

Authors:  P J Herzer; S Inouye; M Inouye
Journal:  Mol Microbiol       Date:  1992-02       Impact factor: 3.501

Review 10.  'Binding, bending and bonding': polypurine tract-primed initiation of plus-strand DNA synthesis in human immunodeficiency virus.

Authors:  Jason W Rausch; Stuart F J Le Grice
Journal:  Int J Biochem Cell Biol       Date:  2004-09       Impact factor: 5.085

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  2 in total

Review 1.  Retrons and their applications in genome engineering.

Authors:  Anna J Simon; Andrew D Ellington; Ilya J Finkelstein
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

2.  Chicken innate immune response to oral infection with Salmonella enterica serovar Enteritidis.

Authors:  Marta Matulova; Karolina Varmuzova; Frantisek Sisak; Hana Havlickova; Vladimir Babak; Karel Stejskal; Zbynek Zdrahal; Ivan Rychlik
Journal:  Vet Res       Date:  2013-05-20       Impact factor: 3.683

  2 in total

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