Literature DB >> 21439834

Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22.

Jinghua Tang1, Gabriel C Lander, Adam S Olia, Adam Olia, Rui Li, Sherwood Casjens, Peter Prevelige, Gino Cingolani, Timothy S Baker, John E Johnson.   

Abstract

The encapsidated genome in all double-strand DNA bacteriophages is packaged to liquid crystalline density through a unique vertex in the procapsid assembly intermediate, which has a portal protein dodecamer in place of five coat protein subunits. The portal orchestrates DNA packaging and exit, through a series of varying interactions with the scaffolding, terminase, and closure proteins. Here, we report an asymmetric cryoEM reconstruction of the entire P22 virion at 7.8 Å resolution. X-ray crystal structure models of the full-length portal and of the portal lacking 123 residues at the C terminus in complex with gene product 4 (Δ123portal-gp4) obtained by Olia et al. (2011) were fitted into this reconstruction. The interpreted density map revealed that the 150 Å, coiled-coil, barrel portion of the portal entraps the last DNA to be packaged and suggests a mechanism for head-full DNA signaling and transient stabilization of the genome during addition of closure proteins.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21439834      PMCID: PMC3075339          DOI: 10.1016/j.str.2011.02.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  30 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  Ab initio random model method facilitates 3D reconstruction of icosahedral particles.

Authors:  Xiaodong Yan; Kelly A Dryden; Jinghua Tang; Timothy S Baker
Journal:  J Struct Biol       Date:  2006-08-11       Impact factor: 2.867

4.  DNA poised for release in bacteriophage phi29.

Authors:  Jinghua Tang; Norman Olson; Paul J Jardine; Shelley Grimes; Dwight L Anderson; Timothy S Baker
Journal:  Structure       Date:  2008-06       Impact factor: 5.006

5.  Bacteriophage p22 portal vertex formation in vivo.

Authors:  Sean D Moore; Peter E Prevelige
Journal:  J Mol Biol       Date:  2002-02-01       Impact factor: 5.469

6.  Mechanism of head assembly and DNA encapsulation in Salmonella phage P22. II. Morphogenetic pathway.

Authors:  J King; E V Lenk; D Botstein
Journal:  J Mol Biol       Date:  1973-11-15       Impact factor: 5.469

7.  Mechanism of head assembly and DNA encapsulation in Salmonella phage p22. I. Genes, proteins, structures and DNA maturation.

Authors:  D Botstein; C H Waddell; J King
Journal:  J Mol Biol       Date:  1973-11-15       Impact factor: 5.469

8.  Steps in the stabilization of newly packaged DNA during phage P22 morphogenesis.

Authors:  H Strauss; J King
Journal:  J Mol Biol       Date:  1984-02-05       Impact factor: 5.469

9.  Structure and assembly of the capsid of bacteriophage P22.

Authors:  J King; D Botstein; S Casjens; W Earnshaw; S Harrison; E Lenk
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1976-11-30       Impact factor: 6.237

10.  Structure of phage P22 cell envelope–penetrating needle.

Authors:  Adam S Olia; Sherwood Casjens; Gino Cingolani
Journal:  Nat Struct Mol Biol       Date:  2007-12       Impact factor: 15.369

View more
  57 in total

Review 1.  Virus maturation.

Authors:  David Veesler; John E Johnson
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

Authors:  Anshul Bhardwaj; Rajeshwer S Sankhala; Adam S Olia; Dewey Brooke; Sherwood R Casjens; Derek J Taylor; Peter E Prevelige; Gino Cingolani
Journal:  J Biol Chem       Date:  2015-11-16       Impact factor: 5.157

3.  Resolution and Probabilistic Models of Components in CryoEM Maps of Mature P22 Bacteriophage.

Authors:  Grigore Pintilie; Dong-Hua Chen; Cameron A Haase-Pettingell; Jonathan A King; Wah Chiu
Journal:  Biophys J       Date:  2015-12-30       Impact factor: 4.033

Review 4.  Nucleic acid packaging in viruses.

Authors:  Jeffrey A Speir; John E Johnson
Journal:  Curr Opin Struct Biol       Date:  2012-01-23       Impact factor: 6.809

5.  Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded.

Authors:  Mary S Dhason; Joseph C-Y Wang; Michael F Hagan; Adam Zlotnick
Journal:  Virology       Date:  2012-05-16       Impact factor: 3.616

6.  Structural investigations of a Podoviridae streptococcus phage C1, implications for the mechanism of viral entry.

Authors:  Anastasia A Aksyuk; Valorie D Bowman; Bärbel Kaufmann; Christopher Fields; Thomas Klose; Heather A Holdaway; Vincent A Fischetti; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

Review 7.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

8.  Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA.

Authors:  Zachary T Berndsen; Nicholas Keller; Douglas E Smith
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

9.  Visualizing a complete Siphoviridae member by single-particle electron microscopy: the structure of lactococcal phage TP901-1.

Authors:  Cecilia Bebeacua; Livia Lai; Christina Skovgaard Vegge; Lone Brøndsted; Marin van Heel; David Veesler; Christian Cambillau
Journal:  J Virol       Date:  2012-11-07       Impact factor: 5.103

Review 10.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.