Literature DB >> 21438587

Addressing the stereochemistry of complex organic molecules by density functional theory-NMR: vannusal B in retrospective.

Giacomo Saielli1, K C Nicolaou, Adrian Ortiz, Hongjun Zhang, Alessandro Bagno.   

Abstract

We have employed density functional theory (DFT) protocols to calculate the NMR properties of the vannusals, a class of natural products whose structures have been the subject of recent investigations. The originally assigned structure of vannusal B was revised after a long synthetic journey which generated a series of closely related diastereomers. In this work we show how DFT calculations based on density functionals and basis sets designed for the prediction of NMR spectra (M06/pcS-2 level of theory) can be used to reproduce the observed parameters, thereby offering to the synthetic chemist a useful tool to discard or accept putative structures of unknown organic molecules.

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Year:  2011        PMID: 21438587      PMCID: PMC3100668          DOI: 10.1021/ja201108a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  30 in total

1.  Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: the DP4 probability.

Authors:  Steven G Smith; Jonathan M Goodman
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

Review 2.  Chasing molecules that were never there: misassigned natural products and the role of chemical synthesis in modern structure elucidation.

Authors:  K C Nicolaou; Scott A Snyder
Journal:  Angew Chem Int Ed Engl       Date:  2005-02-04       Impact factor: 15.336

3.  Structural reassignment of obtusallenes V, VI, and VII by GIAO-based density functional prediction.

Authors:  D Christopher Braddock; Henry S Rzepa
Journal:  J Nat Prod       Date:  2008-02-23       Impact factor: 4.050

4.  Structure revision of hassananes with use of quantum mechanical 13C NMR chemical shifts and UV-vis absorption spectra.

Authors:  Jing Yang; Sheng-Xiong Huang; Qin-Shi Zhao
Journal:  J Phys Chem A       Date:  2008-11-27       Impact factor: 2.781

5.  Effect of electronegative substituents and angular dependence on the heteronuclear spin-spin coupling constant 3J(C-H): an empirical prediction equation derived by density functional theory calculations.

Authors:  Giulia Palermo; Raffaele Riccio; Giuseppe Bifulco
Journal:  J Org Chem       Date:  2010-03-19       Impact factor: 4.354

6.  Predicting NMR spectra by computational methods: structure revision of hexacyclinol.

Authors:  Scott D Rychnovsky
Journal:  Org Lett       Date:  2006-06-22       Impact factor: 6.005

7.  Conformation and configuration of tertiary amines via GIAO-derived (13)C NMR chemical shifts and a multiple independent variable regression analysis.

Authors:  A B Sebag; D A Forsyth; M A Plante
Journal:  J Org Chem       Date:  2001-11-30       Impact factor: 4.354

8.  Can two molecules have the same NMR spectrum? Hexacyclinol revisited.

Authors:  Giacomo Saielli; Alessandro Bagno
Journal:  Org Lett       Date:  2009-03-19       Impact factor: 6.005

9.  Structure revision of spiroleucettadine, a sponge alkaloid with a bicyclic core meager in H-atoms.

Authors:  Kimberly N White; Taro Amagata; Allen G Oliver; Karen Tenney; Philip J Wenzel; Phillip Crews
Journal:  J Org Chem       Date:  2008-10-17       Impact factor: 4.354

10.  Density functional theory calculation of 13C NMR shifts of diazaphenanthrene alkaloids: reinvestigation of the structure of samoquasine A.

Authors:  Cody Timmons; Peter Wipf
Journal:  J Org Chem       Date:  2008-10-17       Impact factor: 4.354

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  16 in total

Review 1.  Constructing molecular complexity and diversity: total synthesis of natural products of biological and medicinal importance.

Authors:  K C Nicolaou; Christopher R H Hale; Christian Nilewski; Heraklidia A Ioannidou
Journal:  Chem Soc Rev       Date:  2012-06-28       Impact factor: 54.564

2.  Structural determination of complex natural products by quantum mechanical calculations of (13)C NMR chemical shifts: development of a parameterized protocol for terpenes.

Authors:  Ana Carolina Ferreira de Albuquerque; Daniel Joras Ribeiro; Mauro Barbosa de Amorim
Journal:  J Mol Model       Date:  2016-07-16       Impact factor: 1.810

3.  Thelepamide: an unprecedented ketide-amino acid from Thelepus crispus, a marine annelid worm.

Authors:  Jaime Rodríguez; Rosa M Nieto; María Blanco; Frederick A Valeriote; Carlos Jiménez; Phillip Crews
Journal:  Org Lett       Date:  2013-12-20       Impact factor: 6.005

4.  A non-Karplus effect: evidence from phosphorus heterocycles and DFT calculations of the dependence of vicinal phosphorus-hydrogen NMR coupling constants on lone-pair conformation.

Authors:  William H Hersh; Sherrell T Lam; Daniel J Moskovic; Antonios J Panagiotakis
Journal:  J Org Chem       Date:  2012-05-23       Impact factor: 4.354

5.  Total synthesis of oxidized welwitindolinones and (-)-N-methylwelwitindolinone C isonitrile.

Authors:  Kyle W Quasdorf; Alexander D Huters; Michael W Lodewyk; Dean J Tantillo; Neil K Garg
Journal:  J Am Chem Soc       Date:  2012-01-11       Impact factor: 15.419

6.  Accessing Multiple Classes of 2 H-Indazoles: Mechanistic Implications for the Cadogan and Davis-Beirut Reactions.

Authors:  Jie S Zhu; Clarabella J Li; Ka Yi Tsui; Niklas Kraemer; Jung-Ho Son; Makhluf J Haddadin; Dean J Tantillo; Mark J Kurth
Journal:  J Am Chem Soc       Date:  2019-04-04       Impact factor: 15.419

7.  A guide to small-molecule structure assignment through computation of (¹H and ¹³C) NMR chemical shifts.

Authors:  Patrick H Willoughby; Matthew J Jansma; Thomas R Hoye
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

Review 8.  Recent advances and applications of experimental technologies in marine natural product research.

Authors:  Ke Li; Yu-Wen Chung-Davidson; Ugo Bussy; Weiming Li
Journal:  Mar Drugs       Date:  2015-04-29       Impact factor: 5.118

9.  Stereochemistry of complex marine natural products by quantum mechanical calculations of NMR chemical shifts: solvent and conformational effects on okadaic acid.

Authors:  Humberto J Domínguez; Guillermo D Crespín; Adrián J Santiago-Benítez; José A Gavín; Manuel Norte; José J Fernández; Antonio Hernández Daranas
Journal:  Mar Drugs       Date:  2014-01-07       Impact factor: 5.118

10.  Plakilactones G and H from a marine sponge. Stereochemical determination of highly flexible systems by quantitative NMR-derived interproton distances combined with quantum mechanical calculations of (13)C chemical shifts.

Authors:  Simone Di Micco; Angela Zampella; Maria Valeria D'Auria; Carmen Festa; Simona De Marino; Raffaele Riccio; Craig P Butts; Giuseppe Bifulco
Journal:  Beilstein J Org Chem       Date:  2013-12-30       Impact factor: 2.883

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