Literature DB >> 27424297

Structural determination of complex natural products by quantum mechanical calculations of (13)C NMR chemical shifts: development of a parameterized protocol for terpenes.

Ana Carolina Ferreira de Albuquerque1, Daniel Joras Ribeiro1, Mauro Barbosa de Amorim2.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is one of the most important tools for determining the structures of organic molecules. Despite the advances made in this technique, revisions of erroneously established structures for natural products are still commonly published in the literature. In this context, the prediction of chemical shifts through ab initio and density functional theory (DFT) calculations has become a very powerful tool for assisting with the structural determination of complex organic molecules. In this work, we present the development of a protocol for (13)C chemical shift calculations of terpenes, a class of natural products that are widely distributed among plant species and are very important due to their biological and pharmacological activities. This protocol consists of GIAO-DFT calculations of chemical shifts and the application of a parameterized scaling factor in order to ensure accurate structural determination of this class of natural products. The application of this protocol to a set of five terpenes yielded accurate calculated chemical shifts, showing that this is a very attractive tool for the calculation of complex organic structures such as terpenes.

Entities:  

Keywords:  GIAO-DFT; Natural products; Nuclear magnetic resonance; Scaling factor; Terpenes

Mesh:

Substances:

Year:  2016        PMID: 27424297     DOI: 10.1007/s00894-016-3045-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  30 in total

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2.  Structure validation of natural products by quantum-mechanical GIAO calculations of 13C NMR chemical shifts.

Authors:  Giampaolo Barone; Luigi Gomez-Paloma; Dario Duca; Arturo Silvestri; Raffaele Riccio; Giuseppe Bifulco
Journal:  Chemistry       Date:  2002-07-15       Impact factor: 5.236

Review 3.  The evolving role of natural products in drug discovery.

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Journal:  Nat Rev Drug Discov       Date:  2005-03       Impact factor: 84.694

Review 4.  Natural sesquiterpenoids.

Authors:  Braulio M Fraga
Journal:  Nat Prod Rep       Date:  2013-07-25       Impact factor: 13.423

5.  Antineoplastic agents 582. Part 1: Isolation and structure of a cyclobutane-type sesquiterpene cancer cell growth inhibitor from Coprinus cinereus (Coprinaceae).

Authors:  George R Pettit; Yanhui Meng; Robin K Pettit; Delbert L Herald; Fiona Hogan; Zbigniew A Cichacz
Journal:  Bioorg Med Chem       Date:  2010-06-12       Impact factor: 3.641

6.  Predicting NMR spectra by computational methods: structure revision of hexacyclinol.

Authors:  Scott D Rychnovsky
Journal:  Org Lett       Date:  2006-06-22       Impact factor: 6.005

7.  Regression formulae for ab initio and density functional calculated chemical shifts.

Authors:  N J R van Eikema Hommes; Timothy Clark
Journal:  J Mol Model       Date:  2005-03-24       Impact factor: 1.810

8.  Total syntheses of (+)-echinopine A and B: determination of absolute stereochemistry.

Authors:  Thomas Magauer; Johann Mulzer; Konrad Tiefenbacher
Journal:  Org Lett       Date:  2009-11-19       Impact factor: 6.005

9.  The correct structure of aquatolide-experimental validation of a theoretically-predicted structural revision.

Authors:  Michael W Lodewyk; Cristian Soldi; Paul B Jones; Marilyn M Olmstead; Juan Rita; Jared T Shaw; Dean J Tantillo
Journal:  J Am Chem Soc       Date:  2012-11-05       Impact factor: 15.419

10.  Structure reassignment of laurefurenynes A and B by computation and total synthesis.

Authors:  David J Shepherd; Phillip A Broadwith; Bryony S Dyson; Robert S Paton; Jonathan W Burton
Journal:  Chemistry       Date:  2013-08-21       Impact factor: 5.236

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  2 in total

1.  Prediction of 19F NMR Chemical Shifts for Fluorinated Aromatic Compounds.

Authors:  Carla Saunders; Mohammad B Khaled; Jimmie D Weaver; Dean J Tantillo
Journal:  J Org Chem       Date:  2018-02-26       Impact factor: 4.354

2.  Application of Computational Chemical Shift Prediction Techniques to the Cereoanhydride Structure Problem-Carboxylate Complications.

Authors:  Carla M Saunders; Dean J Tantillo
Journal:  Mar Drugs       Date:  2017-06-12       Impact factor: 5.118

  2 in total

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