Literature DB >> 21435940

Genome demethylation and imprinting in the endosperm.

Matthew J Bauer1, Robert L Fischer.   

Abstract

Imprinting occurs in the endosperm of flowering plants. The endosperm, a product of central cell fertilization, is critical for embryo and seed development. Imprinting in the endosperm is mainly due to the inherited differences in gamete epigenetic composition. Studies have also shown that there are differences in genomic DNA methylation patterns between embryo and endosperm. Examining those differences, along with mutations in the DNA demethylase gene DEMETER, gives insight into the number of imprinted genes and how an antagonistic relationship between TE defense and gene regulation could evolutionarily affect imprinting establishment. Finally, studies demonstrate that DEMETER demethylase activity influences endosperm chromatin composition, and could possibly enhance DNA de novo methylation activity.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21435940      PMCID: PMC3082360          DOI: 10.1016/j.pbi.2011.02.006

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  47 in total

Review 1.  Female gametophyte development.

Authors:  Ramin Yadegari; Gary N Drews
Journal:  Plant Cell       Date:  2004-04-09       Impact factor: 11.277

Review 2.  Imprinting and seed development.

Authors:  Mary Gehring; Yeonhee Choi; Robert L Fischer
Journal:  Plant Cell       Date:  2004-03-09       Impact factor: 11.277

3.  Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission.

Authors:  J L Kermicle
Journal:  Genetics       Date:  1970-09       Impact factor: 4.562

Review 4.  Endosperm gene imprinting and seed development.

Authors:  Jin Hoe Huh; Matthew J Bauer; Tzung-Fu Hsieh; Robert Fischer
Journal:  Curr Opin Genet Dev       Date:  2007-10-24       Impact factor: 5.578

Review 5.  Epigenetic regulation of transposable elements in plants.

Authors:  Damon Lisch
Journal:  Annu Rev Plant Biol       Date:  2009       Impact factor: 26.379

Review 6.  Polycomb group gene function in sexual and asexual seed development in angiosperms.

Authors:  Julio C M Rodrigues; Ming Luo; Frédéric Berger; Anna M G Koltunow
Journal:  Sex Plant Reprod       Date:  2009-12-29

7.  Control of PHERES1 imprinting in Arabidopsis by direct tandem repeats.

Authors:  Corina Belle R Villar; Aleksandra Erilova; Grigory Makarevich; Raphael Trösch; Claudia Köhler
Journal:  Mol Plant       Date:  2009-05-07       Impact factor: 13.164

8.  Maintenance of genomic imprinting at the Arabidopsis medea locus requires zygotic DDM1 activity.

Authors:  J P Vielle-Calzada; J Thomas; C Spillane; A Coluccio; M A Hoeppner; U Grossniklaus
Journal:  Genes Dev       Date:  1999-11-15       Impact factor: 11.361

9.  The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1.

Authors:  Claudia Köhler; Lars Hennig; Charles Spillane; Stephane Pien; Wilhelm Gruissem; Ueli Grossniklaus
Journal:  Genes Dev       Date:  2003-06-15       Impact factor: 11.361

10.  Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions.

Authors:  Olga N Danilevskaya; Pedro Hermon; Sabine Hantke; Michael G Muszynski; Krishna Kollipara; Evgueni V Ananiev
Journal:  Plant Cell       Date:  2003-02       Impact factor: 11.277

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  40 in total

1.  The female gametophyte.

Authors:  Gary N Drews; Anna M G Koltunow
Journal:  Arabidopsis Book       Date:  2011-12-26

2.  Alterations of histone modifications at the senescence-associated gene HvS40 in barley during senescence.

Authors:  Nicole Ay; Bianka Janack; Andreas Fischer; Gunter Reuter; Klaus Humbeck
Journal:  Plant Mol Biol       Date:  2015-08-07       Impact factor: 4.076

3.  Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species.

Authors:  Amanda J Waters; Paul Bilinski; Steven R Eichten; Matthew W Vaughn; Jeffrey Ross-Ibarra; Mary Gehring; Nathan M Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

4.  DNA demethylase ROS1 negatively regulates the imprinting of DOGL4 and seed dormancy in Arabidopsis thaliana.

Authors:  Haifeng Zhu; Wenxiang Xie; Dachao Xu; Daisuke Miki; Kai Tang; Chao-Feng Huang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-28       Impact factor: 11.205

Review 5.  Epigenetic memory in plants.

Authors:  Mayumi Iwasaki; Jerzy Paszkowski
Journal:  EMBO J       Date:  2014-08-07       Impact factor: 11.598

Review 6.  Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation.

Authors:  Steven R Eichten; Robert J Schmitz; Nathan M Springer
Journal:  Plant Physiol       Date:  2014-05-28       Impact factor: 8.340

Review 7.  Repair of oxidatively induced DNA damage by DNA glycosylases: Mechanisms of action, substrate specificities and excision kinetics.

Authors:  Miral Dizdaroglu; Erdem Coskun; Pawel Jaruga
Journal:  Mutat Res Rev Mutat Res       Date:  2017-02-16       Impact factor: 5.657

8.  DEMETER plays a role in DNA demethylation and disease response in somatic tissues of Arabidopsis.

Authors:  Ulrike Schumann; Joanne M Lee; Neil A Smith; Chengcheng Zhong; Jian-Kang Zhu; Elizabeth S Dennis; Anthony A Millar; Ming-Bo Wang
Journal:  Epigenetics       Date:  2019-06-19       Impact factor: 4.528

9.  Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm.

Authors:  Jessica A Rodrigues; Randy Ruan; Toshiro Nishimura; Manoj K Sharma; Rita Sharma; Pamela C Ronald; Robert L Fischer; Daniel Zilberman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-23       Impact factor: 11.205

Review 10.  Role of Base Excision "Repair" Enzymes in Erasing Epigenetic Marks from DNA.

Authors:  Alexander C Drohat; Christopher T Coey
Journal:  Chem Rev       Date:  2016-08-08       Impact factor: 60.622

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