Literature DB >> 21431731

Single molecule imaging of RNA in situ.

Mona Batish1, Arjun Raj, Sanjay Tyagi.   

Abstract

This protocol describes a method to image individual mRNA molecules in situ. About 50 oligonucleotides complementary to different regions of a target mRNA species are used simultaneously. Each probe is labeled with a single fluorescent moiety. When these probes bind to their target, each mRNA molecule becomes so intensely fluorescent that it can be seen as a fine fluorescent spot. Several different mRNA species can be detected in multiplex imaging using differently colored probe sets for each species. An automated image-processing program is used to count the number of mRNA molecules of each species that are expressed in each cell, thus yielding single-cell gene expression profiles.

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Year:  2011        PMID: 21431731     DOI: 10.1007/978-1-61779-005-8_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  32 in total

1.  Concentration-dependent requirement for local protein synthesis in motor neuron subtype-specific response to axon guidance cues.

Authors:  Stéphane Nédelec; Mirza Peljto; Peng Shi; Mackenzie W Amoroso; Lance C Kam; Hynek Wichterle
Journal:  J Neurosci       Date:  2012-01-25       Impact factor: 6.167

2.  A dynamic population of stromal cells contributes to the follicle stem cell niche in the Drosophila ovary.

Authors:  Pankaj Sahai-Hernandez; Todd G Nystul
Journal:  Development       Date:  2013-10-16       Impact factor: 6.868

3.  A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain.

Authors:  Benjamin Kleaveland; Charlie Y Shi; Joanna Stefano; David P Bartel
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

Review 4.  Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function.

Authors:  Tamer Sallam; Jaspreet Sandhu; Peter Tontonoz
Journal:  Circ Res       Date:  2018-01-05       Impact factor: 17.367

Review 5.  Illuminating Genomic Dark Matter with RNA Imaging.

Authors:  Arjun Raj; John L Rinn
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

6.  FISH-Flow, a protocol for the concurrent detection of mRNA and protein in single cells using fluorescence in situ hybridization and flow cytometry.

Authors:  Riccardo Arrigucci; Yuri Bushkin; Felix Radford; Karim Lakehal; Pooja Vir; Richard Pine; December Martin; Jeffrey Sugarman; Yanlin Zhao; George S Yap; Alfred A Lardizabal; Sanjay Tyagi; Maria Laura Gennaro
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

7.  Astrocyte-produced leukemia inhibitory factor expands the neural stem/progenitor pool following perinatal hypoxia-ischemia.

Authors:  Ryan J Felling; Matthew V Covey; Paul Wolujewicz; Mona Batish; Steven W Levison
Journal:  J Neurosci Res       Date:  2016-09-23       Impact factor: 4.164

Review 8.  Teaching an Old Virus New Tricks: A Review on New Approaches to Study Age-Old Questions in Influenza Biology.

Authors:  Seema S Lakdawala; Nara Lee; Christopher B Brooke
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

9.  Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue.

Authors:  Najaf A Shah; Marshall J Levesque; Arjun Raj; Casim A Sarkar
Journal:  J Cell Sci       Date:  2015-07-09       Impact factor: 5.285

10.  Hepatitis B Virus Polymerase Localizes to the Mitochondria, and Its Terminal Protein Domain Contains the Mitochondrial Targeting Signal.

Authors:  Nuruddin Unchwaniwala; Nathan M Sherer; Daniel D Loeb
Journal:  J Virol       Date:  2016-09-12       Impact factor: 5.103

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