Literature DB >> 21430772

Molecular biology: A fly in the face of genomics.

Eileen E M Furlong.   

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Year:  2011        PMID: 21430772     DOI: 10.1038/471458a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  16 in total

1.  A toolkit for high-throughput, cross-species gene engineering in Drosophila.

Authors:  Radoslaw K Ejsmont; Mihail Sarov; Sylke Winkler; Kamil A Lipinski; Pavel Tomancak
Journal:  Nat Methods       Date:  2009-06       Impact factor: 28.547

2.  The transcriptional diversity of 25 Drosophila cell lines.

Authors:  Lucy Cherbas; Aarron Willingham; Dayu Zhang; Li Yang; Yi Zou; Brian D Eads; Joseph W Carlson; Jane M Landolin; Philipp Kapranov; Jacqueline Dumais; Anastasia Samsonova; Jeong-Hyeon Choi; Johnny Roberts; Carrie A Davis; Haixu Tang; Marijke J van Baren; Srinka Ghosh; Alexander Dobin; Kim Bell; Wei Lin; Laura Langton; Michael O Duff; Aaron E Tenney; Chris Zaleski; Michael R Brent; Roger A Hoskins; Thomas C Kaufman; Justen Andrews; Brenton R Graveley; Norbert Perrimon; Susan E Celniker; Thomas R Gingeras; Peter Cherbas
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

3.  Polycomb preferentially targets stalled promoters of coding and noncoding transcripts.

Authors:  Daniel Enderle; Christian Beisel; Michael B Stadler; Moritz Gerstung; Prashanth Athri; Renato Paro
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

4.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:  Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason D Lieb; Robert H Waterston
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

5.  Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.

Authors:  Guillaume J Filion; Joke G van Bemmel; Ulrich Braunschweig; Wendy Talhout; Jop Kind; Lucas D Ward; Wim Brugman; Inês J de Castro; Ron M Kerkhoven; Harmen J Bussemaker; Bas van Steensel
Journal:  Cell       Date:  2010-09-30       Impact factor: 41.582

6.  A cis-regulatory map of the Drosophila genome.

Authors:  Nicolas Nègre; Christopher D Brown; Lijia Ma; Christopher Aaron Bristow; Steven W Miller; Ulrich Wagner; Pouya Kheradpour; Matthew L Eaton; Paul Loriaux; Rachel Sealfon; Zirong Li; Haruhiko Ishii; Rebecca F Spokony; Jia Chen; Lindsay Hwang; Chao Cheng; Richard P Auburn; Melissa B Davis; Marc Domanus; Parantu K Shah; Carolyn A Morrison; Jennifer Zieba; Sarah Suchy; Lionel Senderowicz; Alec Victorsen; Nicholas A Bild; A Jason Grundstad; David Hanley; David M MacAlpine; Mattias Mannervik; Koen Venken; Hugo Bellen; Robert White; Mark Gerstein; Steven Russell; Robert L Grossman; Bing Ren; James W Posakony; Manolis Kellis; Kevin P White
Journal:  Nature       Date:  2011-03-24       Impact factor: 49.962

7.  Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila.

Authors:  Katarzyna Oktaba; Luis Gutiérrez; Julien Gagneur; Charles Girardot; Aditya K Sengupta; Eileen E M Furlong; Jürg Müller
Journal:  Dev Cell       Date:  2008-11-06       Impact factor: 12.270

8.  The developmental transcriptome of Drosophila melanogaster.

Authors:  Brenton R Graveley; Angela N Brooks; Joseph W Carlson; Michael O Duff; Jane M Landolin; Li Yang; Carlo G Artieri; Marijke J van Baren; Nathan Boley; Benjamin W Booth; James B Brown; Lucy Cherbas; Carrie A Davis; Alex Dobin; Renhua Li; Wei Lin; John H Malone; Nicolas R Mattiuzzo; David Miller; David Sturgill; Brian B Tuch; Chris Zaleski; Dayu Zhang; Marco Blanchette; Sandrine Dudoit; Brian Eads; Richard E Green; Ann Hammonds; Lichun Jiang; Phil Kapranov; Laura Langton; Norbert Perrimon; Jeremy E Sandler; Kenneth H Wan; Aarron Willingham; Yu Zhang; Yi Zou; Justen Andrews; Peter J Bickel; Steven E Brenner; Michael R Brent; Peter Cherbas; Thomas R Gingeras; Roger A Hoskins; Thomas C Kaufman; Brian Oliver; Susan E Celniker
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

9.  Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Authors:  Peter V Kharchenko; Artyom A Alekseyenko; Yuri B Schwartz; Aki Minoda; Nicole C Riddle; Jason Ernst; Peter J Sabo; Erica Larschan; Andrey A Gorchakov; Tingting Gu; Daniela Linder-Basso; Annette Plachetka; Gregory Shanower; Michael Y Tolstorukov; Lovelace J Luquette; Ruibin Xi; Youngsook L Jung; Richard W Park; Eric P Bishop; Theresa K Canfield; Richard Sandstrom; Robert E Thurman; David M MacAlpine; John A Stamatoyannopoulos; Manolis Kellis; Sarah C R Elgin; Mitzi I Kuroda; Vincenzo Pirrotta; Gary H Karpen; Peter J Park
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

10.  Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.

Authors:  Koen J T Venken; Joseph W Carlson; Karen L Schulze; Hongling Pan; Yuchun He; Rebecca Spokony; Kenneth H Wan; Maxim Koriabine; Pieter J de Jong; Kevin P White; Hugo J Bellen; Roger A Hoskins
Journal:  Nat Methods       Date:  2009-06       Impact factor: 28.547

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  6 in total

Review 1.  Physiological strategies during animal diapause: lessons from brine shrimp and annual killifish.

Authors:  Jason E Podrabsky; Steven C Hand
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

2.  Genomics: Hiding in plain sight.

Authors:  Felix Muerdter; Alexander Stark
Journal:  Nature       Date:  2014-08-28       Impact factor: 49.962

3.  HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature.

Authors:  Evgeny Z Kvon; Gerald Stampfel; J Omar Yáñez-Cuna; Barry J Dickson; Alexander Stark
Journal:  Genes Dev       Date:  2012-04-12       Impact factor: 11.361

4.  Transcription and redox enzyme activities: comparison of equilibrium and disequilibrium levels in the three-spined stickleback.

Authors:  M Nikinmaa; R J S McCairns; M W Nikinmaa; K A Vuori; M Kanerva; T Leinonen; C R Primmer; J Merilä; E H Leder
Journal:  Proc Biol Sci       Date:  2013-01-30       Impact factor: 5.349

5.  Functional annotation of HOT regions in the human genome: implications for human disease and cancer.

Authors:  Hao Li; Hebing Chen; Feng Liu; Chao Ren; Shengqi Wang; Xiaochen Bo; Wenjie Shu
Journal:  Sci Rep       Date:  2015-06-26       Impact factor: 4.379

6.  Genome-wide identification and characterisation of HOT regions in the human genome.

Authors:  Hao Li; Feng Liu; Chao Ren; Xiaochen Bo; Wenjie Shu
Journal:  BMC Genomics       Date:  2016-09-15       Impact factor: 3.969

  6 in total

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