Literature DB >> 21429167

Unlocking the potential of genomic technologies for wildlife forensics.

Rob Ogden1.   

Abstract

Wildlife crime enforcement is increasingly relying on genetic techniques to deliver forensic evidence to investigators. Forensic DNA applications require robust molecular markers, informative at the level of the species, population and individual, in a wide range of taxa. Within species, single-nucleotide polymorphisms (SNPs) have long been recognized as offering many potential advantages over traditional microsatellite markers; however, the best methods for their discovery, validation and genotyping in non-model species remain an area of novel research and much discussion. The potential availability to wildlife geneticists of deep sequencing platforms and high-density genotyping arrays appears to promise an almost infinite source of variable markers for determining the geographic or individual origin of a sample. This study examines the drivers for developing SNP genotyping panels in wildlife forensics and their potential as applied tools, before examining a range of strategies that are being employed to try to unlock this potential and address current questions in wildlife conservation and enforcement.
© 2011 Blackwell Publishing Ltd.

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Year:  2011        PMID: 21429167     DOI: 10.1111/j.1755-0998.2010.02954.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  14 in total

1.  Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing.

Authors:  Paul A Hohenlohe; Mitch D Day; Stephen J Amish; Michael R Miller; Nick Kamps-Hughes; Matthew C Boyer; Clint C Muhlfeld; Fred W Allendorf; Eric A Johnson; Gordon Luikart
Journal:  Mol Ecol       Date:  2013-02-21       Impact factor: 6.185

2.  SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus).

Authors:  Sarah J Helyar; Morten T Limborg; Dorte Bekkevold; Massimiliano Babbucci; Jeroen van Houdt; Gregory E Maes; Luca Bargelloni; Rasmus O Nielsen; Martin I Taylor; Rob Ogden; Alessia Cariani; Gary R Carvalho; Frank Panitz
Journal:  PLoS One       Date:  2012-08-07       Impact factor: 3.240

3.  32 species validation of a new Illumina paired-end approach for the development of microsatellites.

Authors:  Stacey L Lance; Cara N Love; Schyler O Nunziata; Jason R O'Bryhim; David E Scott; R Wesley Flynn; Kenneth L Jones
Journal:  PLoS One       Date:  2013-11-28       Impact factor: 3.240

4.  The conservation genetics juggling act: integrating genetics and ecology, science and policy.

Authors:  Susan M Haig; Mark P Miller; Renee Bellinger; Hope M Draheim; Dacey M Mercer; Thomas D Mullins
Journal:  Evol Appl       Date:  2015-12-01       Impact factor: 5.183

5.  Development of a genetic tool for product regulation in the diverse British pig breed market.

Authors:  Samantha Wilkinson; Alan L Archibald; Chris S Haley; Hendrik-Jan Megens; Richard P M A Crooijmans; Martien A M Groenen; Pamela Wiener; Rob Ogden
Journal:  BMC Genomics       Date:  2012-11-15       Impact factor: 3.969

6.  Two different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted Bornean elephant.

Authors:  Reeta Sharma; Benoit Goossens; Célia Kun-Rodrigues; Tatiana Teixeira; Nurzhafarina Othman; Jason Q Boone; Nathaniel K Jue; Craig Obergfell; Rachel J O'Neill; Lounès Chikhi
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

7.  An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing.

Authors:  Qingzhen Wei; Yunzhu Wang; Xiaodong Qin; Yunxia Zhang; Zhentao Zhang; Jing Wang; Ji Li; Qunfeng Lou; Jinfeng Chen
Journal:  BMC Genomics       Date:  2014-12-22       Impact factor: 3.969

8.  Adaptive genetic variation distinguishes Chilean blue mussels (Mytilus chilensis) from different marine environments.

Authors:  Cristián Araneda; María Angélica Larraín; Benjamin Hecht; Shawn Narum
Journal:  Ecol Evol       Date:  2016-04-26       Impact factor: 2.912

9.  Molecular Identification and Traceability of Illegal Trading in Lignobrycon myersi (Teleostei: Characiformes), a Threatened Brazilian Fish Species, Using DNA Barcode.

Authors:  Alexandre Dos Santos Rodrigues; José Henrique Souza Galdino Brandão; Jamille de Araújo Bitencourt; Ricardo Jucá-Chagas; Iracilda Sampaio; Horácio Schneider; Paulo Roberto Antunes de Mello Affonso
Journal:  ScientificWorldJournal       Date:  2016-09-07

10.  Assessing SNP genotyping of noninvasively collected wildlife samples using microfluidic arrays.

Authors:  Alina von Thaden; Berardino Cocchiararo; Anne Jarausch; Hannah Jüngling; Alexandros A Karamanlidis; Annika Tiesmeyer; Carsten Nowak; Violeta Muñoz-Fuentes
Journal:  Sci Rep       Date:  2017-09-07       Impact factor: 4.379

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