Literature DB >> 21429154

Bryophyte DNA sequences from faeces of an arctic herbivore, barnacle goose (Branta leucopsis).

M Stech1, E Kolvoort, M J J E Loonen, K Vrieling, J D Kruijer.   

Abstract

We tested DNA extraction methods and PCR conditions for the amplification of bryophyte DNA from barnacle goose (Branta leucopsis) faeces collected from Spitsbergen (Svalbard). Both the Qiagen stool kit and a silica-based extraction method received sufficient DNA from fresh and older droppings, as indicated by successful amplification of the plastid psbA-trnH spacer. Standard Taq polymerase outperformed two hot start polymerases. Sequencing of cloned PCR products revealed at least ten moss and two angiosperm sequences. This first example of identifying bryophyte DNA from faeces will allow analysing moss diets of arctic herbivores with a DNA barcoding approach.
© 2010 Blackwell Publishing Ltd.

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Year:  2010        PMID: 21429154     DOI: 10.1111/j.1755-0998.2010.02938.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  5 in total

1.  Discriminatory power of rbcL barcode locus for authentication of some of United Arab Emirates (UAE) native plants.

Authors:  Lina Maloukh; Alagappan Kumarappan; Mohammad Jarrar; Jawad Salehi; Houssam El-Wakil; T V Rajya Lakshmi
Journal:  3 Biotech       Date:  2017-06-08       Impact factor: 2.406

Review 2.  Choosing and using a plant DNA barcode.

Authors:  Peter M Hollingsworth; Sean W Graham; Damon P Little
Journal:  PLoS One       Date:  2011-05-26       Impact factor: 3.240

3.  The loci recommended as universal barcodes for plants on the basis of floristic studies may not work with congeneric species as exemplified by DNA barcoding of Dendrobium species.

Authors:  Hemant Kumar Singh; Iffat Parveen; Saurabh Raghuvanshi; Shashi B Babbar
Journal:  BMC Res Notes       Date:  2012-01-19

4.  Highly overlapping winter diet in two sympatric lemming species revealed by DNA metabarcoding.

Authors:  Eeva M Soininen; Gilles Gauthier; Frédéric Bilodeau; Dominique Berteaux; Ludovic Gielly; Pierre Taberlet; Galina Gussarova; Eva Bellemain; Kristian Hassel; Hans K Stenøien; Laura Epp; Audun Schrøder-Nielsen; Christian Brochmann; Nigel G Yoccoz
Journal:  PLoS One       Date:  2015-01-30       Impact factor: 3.240

5.  A preliminary analysis of the diet composition of overwintering Bean geese (Anser fabalis) and greater white-fronted geese (A. albifrons) in Korea using PCR on fecal samples.

Authors:  Min Kyung Kim; Sang-Im Lee; Baek-Jun Kim; Sang Don Lee
Journal:  Anim Cells Syst (Seoul)       Date:  2017-04-13       Impact factor: 1.815

  5 in total

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