Literature DB >> 21424227

Measuring 1HN temperature coefficients in invisible protein states by relaxation dispersion NMR spectroscopy.

Guillaume Bouvignies1, Pramodh Vallurupalli, Matthew H J Cordes, D Flemming Hansen, Lewis E Kay.   

Abstract

A method based on the Carr-Purcell-Meiboom-Gill relaxation dispersion experiment is presented for measuring the temperature coefficients of amide proton chemical shifts of low populated 'invisible' protein states that exchange with a 'visible' ground state on the millisecond time-scale. The utility of the approach is demonstrated with an application to an I58D mutant of the Pfl6 Cro protein that undergoes exchange between the native, folded state and a cold denatured, unfolded conformational ensemble that is populated at a level of 6% at 2.5°C. A wide distribution of amide temperature coefficients is measured for the unfolded state. The distribution is centered about -5.6 ppb/K, consistent with an absence of intra-molecular hydrogen bonds, on average. However, the large range of values (standard deviation of 2.1 ppb/K) strongly supports the notion that the unfolded state of the protein is not a true random coil polypeptide chain.

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Year:  2011        PMID: 21424227      PMCID: PMC3229278          DOI: 10.1007/s10858-011-9498-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  34 in total

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Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

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Journal:  Protein Sci       Date:  1994-10       Impact factor: 6.725

5.  NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.

Authors:  O Zhang; J D Forman-Kay
Journal:  Biochemistry       Date:  1997-04-01       Impact factor: 3.162

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Journal:  J Mol Biol       Date:  1988-05-05       Impact factor: 5.469

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Journal:  Biochemistry       Date:  2006-05-23       Impact factor: 3.162

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Authors:  Rieko Ishima; James Baber; John M Louis; Dennis A Torchia
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

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Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

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Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

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  6 in total

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Authors:  Vlad K Kumirov; Emily M Dykstra; Branwen M Hall; William J Anderson; Taylor N Szyszka; Matthew H J Cordes
Journal:  Protein Sci       Date:  2018-10-16       Impact factor: 6.725

2.  Using 1 HN amide temperature coefficients to define intrinsically disordered regions: An alternative NMR method.

Authors:  Hiroki Okazaki; Naoki Matsuo; Takeshi Tenno; Natsuko Goda; Yoshiki Shigemitsu; Motonori Ota; Hidekazu Hiroaki
Journal:  Protein Sci       Date:  2018-10-03       Impact factor: 6.725

3.  Mechanism of Protein Denaturation: Partial Unfolding of the P22 Coat Protein I-Domain by Urea Binding.

Authors:  Rebecca L Newcomer; LaTasha C R Fraser; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

4.  A fine balance of hydrophobic-electrostatic communication pathways in a pH-switching protein.

Authors:  Duncan W S MacKenzie; Anna Schaefer; Julia Steckner; Christopher A Leo; Dalia Naser; Efrosini Artikis; Aron Broom; Travis Ko; Purnank Shah; Mikaela Q Ney; Elisa Tran; Martin T J Smith; Brian Fuglestad; A Joshua Wand; Charles L Brooks; Elizabeth M Meiering
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-22       Impact factor: 12.779

5.  A role for indels in the evolution of Cro protein folds.

Authors:  Katie L Stewart; Michael R Nelson; Karen V Eaton; William J Anderson; Matthew H J Cordes
Journal:  Proteins       Date:  2013-08-23

6.  Temperature dependence of NMR chemical shifts: Tracking and statistical analysis.

Authors:  Kyle Trainor; Jeffrey A Palumbo; Duncan W S MacKenzie; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2019-11-26       Impact factor: 6.725

  6 in total

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