Literature DB >> 21417598

Defining the replication program through the chromatin landscape.

Queying Ding1, David M MacAlpine.   

Abstract

DNA replication is an essential cell cycle event required for the accurate and timely duplication of the chromosomes. It is essential that the genome is replicated accurately and completely within the confines of S-phase. Failure to completely copy the genome has the potential to result in catastrophic genomic instability. Replication initiates in a coordinated manner from multiple locations, termed origins of replication, distributed across each of the chromosomes. The selection of these origins of replication is a dynamic process responding to both developmental and tissue-specific signals. In this review, we explore the role of the local chromatin environment in regulating the DNA replication program at the level of origin selection and activation. Finally, there is increasing molecular evidence that the DNA replication program itself affects the chromatin landscape, suggesting that DNA replication is critical for both genetic and epigenetic inheritance.

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Year:  2011        PMID: 21417598      PMCID: PMC3074350          DOI: 10.3109/10409238.2011.560139

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  158 in total

1.  Specification of a DNA replication origin by a transcription complex.

Authors:  Etienne Danis; Konstantin Brodolin; Sophie Menut; Domenico Maiorano; Claire Girard-Reydet; Marcel Méchali
Journal:  Nat Cell Biol       Date:  2004-07-11       Impact factor: 28.824

2.  Chromatin regulates origin activity in Drosophila follicle cells.

Authors:  Bhagwan D Aggarwal; Brian R Calvi
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

3.  The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication.

Authors:  Donald L Pappas; Ryan Frisch; Michael Weinreich
Journal:  Genes Dev       Date:  2004-04-01       Impact factor: 11.361

4.  Recruitment of Xenopus Scc2 and cohesin to chromatin requires the pre-replication complex.

Authors:  Tatsuro S Takahashi; Pannyun Yiu; Michael F Chou; Steven Gygi; Johannes C Walter
Journal:  Nat Cell Biol       Date:  2004-09-26       Impact factor: 28.824

5.  Changes i chromosomal DNA replication tterns in developing frog embryos.

Authors:  P J Stambrook; R A Flickinger
Journal:  J Exp Zool       Date:  1970-05

6.  The units of DNA replication in Drosophila melanogaster chromosomes.

Authors:  A B Blumenthal; H J Kriegstein; D S Hogness
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974

7.  Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts.

Authors:  Peter J Gillespie; Tatsuya Hirano
Journal:  Curr Biol       Date:  2004-09-07       Impact factor: 10.834

8.  The human beta-globin replication initiation region consists of two modular independent replicators.

Authors:  Lixin Wang; Chii-Mei Lin; Sarah Brooks; Dan Cimbora; Mark Groudine; Mirit I Aladjem
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

9.  Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance.

Authors:  Supriya G Prasanth; Kannanganattu V Prasanth; Khalid Siddiqui; David L Spector; Bruce Stillman
Journal:  EMBO J       Date:  2004-06-24       Impact factor: 11.598

10.  Prediction of Saccharomyces cerevisiae replication origins.

Authors:  Adam M Breier; Sourav Chatterji; Nicholas R Cozzarelli
Journal:  Genome Biol       Date:  2004-03-04       Impact factor: 13.583

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  17 in total

1.  Histone H4K20 tri-methylation at late-firing origins ensures timely heterochromatin replication.

Authors:  Julien Brustel; Nina Kirstein; Fanny Izard; Charlotte Grimaud; Paulina Prorok; Christelle Cayrou; Gunnar Schotta; Alhassan F Abdelsamie; Jérôme Déjardin; Marcel Méchali; Giuseppe Baldacci; Claude Sardet; Jean-Charles Cadoret; Aloys Schepers; Eric Julien
Journal:  EMBO J       Date:  2017-08-04       Impact factor: 11.598

Review 2.  Regulation of DNA replication during development.

Authors:  Jared Nordman; Terry L Orr-Weaver
Journal:  Development       Date:  2012-02       Impact factor: 6.868

3.  Genome-Wide Analysis of the Arabidopsis Replication Timing Program.

Authors:  Lorenzo Concia; Ashley M Brooks; Emily Wheeler; Gregory J Zynda; Emily E Wear; Chantal LeBlanc; Jawon Song; Tae-Jin Lee; Pete E Pascuzzi; Robert A Martienssen; Matthew W Vaughn; William F Thompson; Linda Hanley-Bowdoin
Journal:  Plant Physiol       Date:  2018-01-04       Impact factor: 8.340

Review 4.  Helicase loading at chromosomal origins of replication.

Authors:  Stephen P Bell; Jon M Kaguni
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-06-01       Impact factor: 10.005

5.  Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus.

Authors:  Kathleen Kylie; Julia Romero; Indeewari K S Lindamulage; James Knockleby; Hoyun Lee
Journal:  Cell Cycle       Date:  2016-06-24       Impact factor: 4.534

Review 6.  DNA replication origins.

Authors:  Alan C Leonard; Marcel Méchali
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

Review 7.  Chromatin structure and replication origins: determinants of chromosome replication and nuclear organization.

Authors:  Owen K Smith; Mirit I Aladjem
Journal:  J Mol Biol       Date:  2014-06-04       Impact factor: 5.469

Review 8.  Mechanisms for initiating cellular DNA replication.

Authors:  Alessandro Costa; Iris V Hood; James M Berger
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

9.  DNA replication stress induces deregulation of the cell cycle events in root meristems of Allium cepa.

Authors:  Aneta Zabka; Justyna Teresa Polit; Janusz Maszewski
Journal:  Ann Bot       Date:  2012-10-18       Impact factor: 4.357

10.  Human telomeres replicate using chromosome-specific, rather than universal, replication programs.

Authors:  William C Drosopoulos; Settapong T Kosiyatrakul; Zi Yan; Simone G Calderano; Carl L Schildkraut
Journal:  J Cell Biol       Date:  2012-04-16       Impact factor: 10.539

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