Literature DB >> 21411450

Variation of osteocyte lacunae size within the tetrapod skeleton: implications for palaeogenomics.

Shaena Montanari1, Stephen L Brusatte, Wendy De Wolf, Mark A Norell.   

Abstract

Recent studies have emphasized the ability to reconstruct genome sizes (C-values) of extinct organisms such as dinosaurs, using correlations between known genome sizes and bone cell (osteocyte lacunae) volumes. Because of the established positive relationship between cell size and genome size in extant vertebrates, osteocyte lacunae volume is a viable proxy for reconstructing C-values in the absence of any viable genetic material. However, intra-skeletal osteocyte lacunae size variation, which could cause error in genome size estimation, has remained unexplored. Here, 11 skeletal elements of one individual from each of four major clades (Mammalia, Amphibia, Aves, Reptilia) were examined histologically. Skeletal elements in all four clades exhibit significant differences in the average sizes of their lacunae. This variation, however, generally does not cause a significant difference in the estimated genome size when common phylogenetic estimation methods are employed. On the other hand, the spread of the estimations illustrates that this method may not be precise. High variance in genome size estimations remains an outstanding problem. Additionally, a suite of new methods is introduced to further automate the measurement of bone cells and other microstructural features on histological thin sections.

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Year:  2011        PMID: 21411450      PMCID: PMC3169053          DOI: 10.1098/rsbl.2011.0173

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  10 in total

Review 1.  The bigger the C-value, the larger the cell: genome size and red blood cell size in vertebrates.

Authors:  T R Gregory
Journal:  Blood Cells Mol Dis       Date:  2001 Sep-Oct       Impact factor: 3.039

2.  A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class aves.

Authors:  T Ryan Gregory
Journal:  Evolution       Date:  2002-01       Impact factor: 3.694

3.  Paleogenomic data suggest mammal-like genome size in the ancestral amniote and derived large genome size in amphibians.

Authors:  C L Organ; A Canoville; R R Reisz; M Laurin
Journal:  J Evol Biol       Date:  2010-11-22       Impact factor: 2.411

4.  Palaeogenomics of pterosaurs and the evolution of small genome size in flying vertebrates.

Authors:  Chris L Organ; Andrew M Shedlock
Journal:  Biol Lett       Date:  2009-02-23       Impact factor: 3.703

5.  Sauropod dinosaurs evolved moderately sized genomes unrelated to body size.

Authors:  Chris L Organ; Stephen L Brusatte; Koen Stein
Journal:  Proc Biol Sci       Date:  2009-09-30       Impact factor: 5.349

Review 6.  Function of osteocytes in bone.

Authors:  E M Aarden; E H Burger; P J Nijweide
Journal:  J Cell Biochem       Date:  1994-07       Impact factor: 4.429

7.  Size and density of osteocyte lacunae in different regions of long bones.

Authors:  V Canè; G Marotti; G Volpi; D Zaffe; S Palazzini; F Remaggi; M A Muglia
Journal:  Calcif Tissue Int       Date:  1982       Impact factor: 4.333

8.  PhyloPars: estimation of missing parameter values using phylogeny.

Authors:  Jorn Bruggeman; Jaap Heringa; Bernd W Brandt
Journal:  Nucleic Acids Res       Date:  2009-05-13       Impact factor: 16.971

9.  Origin of avian genome size and structure in non-avian dinosaurs.

Authors:  Chris L Organ; Andrew M Shedlock; Andrew Meade; Mark Pagel; Scott V Edwards
Journal:  Nature       Date:  2007-03-08       Impact factor: 49.962

10.  Eukaryotic genome size databases.

Authors:  T Ryan Gregory; James A Nicol; Heidi Tamm; Bellis Kullman; Kaur Kullman; Ilia J Leitch; Brian G Murray; Donald F Kapraun; Johann Greilhuber; Michael D Bennett
Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971

  10 in total
  3 in total

1.  The enigmas of bone without osteocytes.

Authors:  Ron Shahar; Mason N Dean
Journal:  Bonekey Rep       Date:  2013-05-01

2.  The effect of naturally occurring chronic kidney disease on the micro-structural and mechanical properties of bone.

Authors:  Anna Shipov; Gilad Segev; Hagar Meltzer; Moran Milrad; Ori Brenner; Ayelet Atkins; Ron Shahar
Journal:  PLoS One       Date:  2014-10-15       Impact factor: 3.240

3.  Osteohistological variation in growth marks and osteocyte lacunar density in a theropod dinosaur (Coelurosauria: Ornithomimidae).

Authors:  Thomas M Cullen; David C Evans; Michael J Ryan; Philip J Currie; Yoshitsugu Kobayashi
Journal:  BMC Evol Biol       Date:  2014-11-25       Impact factor: 3.260

  3 in total

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