Literature DB >> 21406855

Hydrodynamic effects in proteins.

Piotr Szymczak1, Marek Cieplak.   

Abstract

Experimental and numerical results pertaining to flow-induced effects in proteins are reviewed. Special emphasis is placed on shear-induced unfolding and on the role of solvent mediated hydrodynamic interactions in the conformational transitions in proteins.

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Year:  2010        PMID： 21406855     DOI： 10.1088/0953-8984/23/3/033102

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN： 0953-8984            Impact factor:   2.333


  16 in total

1.  Molecular dynamics simulation of temperature induced unfolding of animal prion protein.

Authors:  Xin Chen; Danhui Duan; Shuyan Zhu; Jinglai Zhang
Journal:  J Mol Model       Date:  2013-08-08       Impact factor: 1.810

2.  Dynamic simulation of concentrated macromolecular solutions with screened long-range hydrodynamic interactions: algorithm and limitations.

Authors:  Tadashi Ando; Edmond Chow; Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

3.  Perspective: On the importance of hydrodynamic interactions in the subcellular dynamics of macromolecules.

Authors:  Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2016-09-14       Impact factor: 3.488

4.  STABILITY OF A CYLINDRICAL SOLUTE-SOLVENT INTERFACE: EFFECT OF GEOMETRY, ELECTROSTATICS, AND HYDRODYNAMICS.

Authors:  B O Li; Hui Sun; Shenggao Zhou
Journal:  SIAM J Appl Math       Date:  2015-05-05       Impact factor: 2.080

5.  Numerical Treatment of Stokes Solvent Flow and Solute-Solvent Interfacial Dynamics for Nonpolar Molecules.

Authors:  Hui Sun; Shenggao Zhou; David K Moore; Li-Tien Cheng; Bo Li
Journal:  J Sci Comput       Date:  2015-09-12       Impact factor: 2.592

6.  A molecule-centered method for accelerating the calculation of hydrodynamic interactions in Brownian dynamics simulations containing many flexible biomolecules.

Authors:  Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2013-07-09       Impact factor: 6.006

7.  Coarse-Grain Modeling of Shear-Induced Binding between von Willebrand Factor and Collagen.

Authors:  Wei Wei; Chuqiao Dong; Michael Morabito; Xuanhong Cheng; X Frank Zhang; Edmund B Webb; Alparslan Oztekin
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

8.  Inducing protein aggregation by extensional flow.

Authors:  John Dobson; Amit Kumar; Leon F Willis; Roman Tuma; Daniel R Higazi; Richard Turner; David C Lowe; Alison E Ashcroft; Sheena E Radford; Nikil Kapur; David J Brockwell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

9.  Nanoprobing of misfolding and interactions of amyloid β 42 protein.

Authors:  Bo-Hyun Kim; Yuri L Lyubchenko
Journal:  Nanomedicine       Date:  2013-12-10       Impact factor: 5.307

10.  Protein Simulations in Fluids: Coupling the OPEP Coarse-Grained Force Field with Hydrodynamics.

Authors:  Fabio Sterpone; Philippe Derreumaux; Simone Melchionna
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006
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