Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum.

Literature DB >> 21398547

Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum.

David A Miller¹, Garret Suen, David Bruce, Alex Copeland, Jan-Feng Cheng, Chris Detter, Lynne A Goodwin, Cliff S Han, Loren J Hauser, Miriam L Land, Alla Lapidus, Susan Lucas, Linda Meincke, Sam Pitluck, Roxanne Tapia, Hazuki Teshima, Tanja Woyke, Brian G Fox, Esther R Angert, Cameron R Currie.

Abstract

Cellulosilyticum lentocellum DSM 5427 is an anaerobic, endospore-forming member of the Firmicutes. We describe the complete genome sequence of this cellulose-degrading bacterium, which was originally isolated from estuarine sediment of a river that received both domestic and paper mill waste. Comparative genomics of cellulolytic clostridia will provide insight into factors that influence degradation rates.

Entities: Chemical Species

Mesh：

Substances：

Year: 2011 PMID： 21398547 PMCID： PMC3133088 DOI： 10.1128/JB.00239-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

16 in total

1. The KEGG resource for deciphering the genome.

Authors: Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

2. Solexa Ltd.

Authors: Simon Bennett
Journal: Pharmacogenomics Date: 2004-06 Impact factor: 2.533

3. Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.

Authors: Christopher L Hemme; Housna Mouttaki; Yong-Jin Lee; Gengxin Zhang; Lynne Goodwin; Susan Lucas; Alex Copeland; Alla Lapidus; Tijana Glavina del Rio; Hope Tice; Elizabeth Saunders; Thomas Brettin; John C Detter; Cliff S Han; Sam Pitluck; Miriam L Land; Loren J Hauser; Nikos Kyrpides; Natalia Mikhailova; Zhili He; Liyou Wu; Joy D Van Nostrand; Bernard Henrissat; Qiang He; Paul A Lawson; Ralph S Tanner; Lee R Lynd; Juergen Wiegel; Matthew W Fields; Adam P Arkin; Christopher W Schadt; Bradley S Stevenson; Michael J McInerney; Yunfeng Yang; Hailiang Dong; Defeng Xing; Nanqi Ren; Aijie Wang; Raymond L Huhnke; Jonathan R Mielenz; Shi-You Ding; Michael E Himmel; Safiyh Taghavi; Daniël van der Lelie; Edward M Rubin; Jizhong Zhou
Journal: J Bacteriol Date: 2010-10-01 Impact factor: 3.490

4. Genome sequencing in microfabricated high-density picolitre reactors.

Authors: Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal: Nature Date: 2005-07-31 Impact factor: 49.962

5. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors: B Ewing; L Hillier; M C Wendl; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

6. Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors: B Ewing; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

7. Consed: a graphical tool for sequence finishing.

Authors: D Gordon; C Abajian; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

8. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors: T M Lowe; S R Eddy
Journal: Nucleic Acids Res Date: 1997-03-01 Impact factor: 16.971

9. Clostridium lentocellum SG6--a potential organism for fermentation of cellulose to acetic acid.

Authors: T Ravinder; M V Swamy; G Seenayya; G Reddy
Journal: Bioresour Technol Date: 2001-12 Impact factor: 9.642

10. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

Authors: M D Collins; P A Lawson; A Willems; J J Cordoba; J Fernandez-Garayzabal; P Garcia; J Cai; H Hippe; J A Farrow
Journal: Int J Syst Bacteriol Date: 1994-10

13 in total

1. Exploring a Possible Link between the Intestinal Microbiota and Feed Efficiency in Pigs.

Authors: Ursula M McCormack; Tânia Curião; Stefan G Buzoianu; Maria L Prieto; Tomas Ryan; Patrick Varley; Fiona Crispie; Elizabeth Magowan; Barbara U Metzler-Zebeli; Donagh Berry; Orla O'Sullivan; Paul D Cotter; Gillian E Gardiner; Peadar G Lawlor
Journal: Appl Environ Microbiol Date: 2017-07-17 Impact factor: 4.792

2. Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.

Authors: Elizabeth K Unger; Jacob P Keller; Michael Altermatt; Ruqiang Liang; Aya Matsui; Chunyang Dong; Olivia J Hon; Zi Yao; Junqing Sun; Samba Banala; Meghan E Flanigan; David A Jaffe; Samantha Hartanto; Jane Carlen; Grace O Mizuno; Phillip M Borden; Amol V Shivange; Lindsay P Cameron; Steffen Sinning; Suzanne M Underhill; David E Olson; Susan G Amara; Duncan Temple Lang; Gary Rudnick; Jonathan S Marvin; Luke D Lavis; Henry A Lester; Veronica A Alvarez; Andrew J Fisher; Jennifer A Prescher; Thomas L Kash; Vladimir Yarov-Yarovoy; Viviana Gradinaru; Loren L Looger; Lin Tian
Journal: Cell Date: 2020-12-16 Impact factor: 41.582

3. The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium.

Authors: David A Miller; Garret Suen; Kendall D Clements; Esther R Angert
Journal: BMC Genomics Date: 2012-06-21 Impact factor: 3.969

4. Elucidation of operon structures across closely related bacterial genomes.

Authors: Chuan Zhou; Qin Ma; Guojun Li
Journal: PLoS One Date: 2014-06-24 Impact factor: 3.240

5. Phylogenetic Diversity, Distribution, and Cophylogeny of Giant Bacteria (Epulopiscium) with their Surgeonfish Hosts in the Red Sea.

Authors: Sou Miyake; David K Ngugi; Ulrich Stingl
Journal: Front Microbiol Date: 2016-03-14 Impact factor: 5.640

6. Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose.

Authors: Ning Zhu; Jinshui Yang; Lei Ji; Jiawen Liu; Yi Yang; Hongli Yuan
Journal: Biotechnol Biofuels Date: 2016-11-09 Impact factor: 6.040

7. A historical legacy of antibiotic utilization on bacterial seed banks in sediments.

Authors: Laura Madueño; Christophe Paul; Thomas Junier; Zhanna Bayrychenko; Sevasti Filippidou; Karin Beck; Gilbert Greub; Helmut Bürgmann; Pilar Junier
Journal: PeerJ Date: 2018-01-03 Impact factor: 2.984

8. Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community.

Authors: Yizhuang Zhou; Phillip B Pope; Shaochun Li; Bo Wen; Fengji Tan; Shu Cheng; Jing Chen; Jinlong Yang; Feng Liu; Xuejing Lei; Qingqing Su; Chengran Zhou; Jiao Zhao; Xiuzhu Dong; Tao Jin; Xin Zhou; Shuang Yang; Gengyun Zhang; Huangming Yang; Jian Wang; Ruifu Yang; Vincent G H Eijsink; Jun Wang
Journal: Sci Rep Date: 2014-06-13 Impact factor: 4.379

9. Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness.

Authors: Hui Yang; Xiaochang Huang; Shaoming Fang; Wenshui Xin; Lusheng Huang; Congying Chen
Journal: Sci Rep Date: 2016-06-03 Impact factor: 4.379

10. Host-Microbiota Interactions in Ileum and Caecum of Pigs Divergent in Feed Efficiency Contribute to Nutrient Utilization.

Authors: Henry Reyer; Michael Oster; Ursula M McCormack; Eduard Muráni; Gillian E Gardiner; Siriluck Ponsuksili; Peadar G Lawlor; Klaus Wimmers
Journal: Microorganisms Date: 2020-04-14