Literature DB >> 21393834

Expression, purification and preliminary X-ray crystallographic analysis of cyanobacterial biliverdin reductase.

Aya Watanabe1, Kunio Hirata, Yoshinori Hagiwara, Yuko Yutani, Masakazu Sugishima, Masaki Yamamoto, Keiichi Fukuyama, Kei Wada.   

Abstract

Biliverdin reductase (BVR) catalyzes the conversion of biliverdin IX α to bilirubin IX α with concomitant oxidation of an NADH or NADPH cofactor. This enzyme also binds DNA and enhances the transcription of specific genes. Recombinant cyanobacterial BVR was overexpressed in Escherichia coli, purified and crystallized. A native data set was collected to 2.34 Å resolution on beamline BL38B1 at SPring-8. An SeMet data set was collected from a microcrystal (300×10×10 µm) on the RIKEN targeted protein beamline BL32XU and diffraction spots were obtained to 3.0 Å resolution. The native BVR crystal belonged to space group P2(1)2(1)2(1), with unit-cell parameters a=58.8, b=88.4, c=132.6 Å. Assuming that two molecules are present in the asymmetric unit, VM (the Matthews coefficient) was calculated to be 2.37 Å3 Da(-1) and the solvent content was estimated to be 48.1%. The structure of cyanobacterial BVR may provide insights into the mechanisms of its enzymatic and physiological functions.

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Year:  2011        PMID: 21393834      PMCID: PMC3053154          DOI: 10.1107/S1744309110053431

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-02

Review 2.  Haem degradation in animals and plants.

Authors:  T J Mantle
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

3.  Crystal structure of dimeric heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme.

Authors:  Masakazu Sugishima; Yoshinori Hagiwara; Xuhong Zhang; Tadashi Yoshida; Catharina T Migita; Keiichi Fukuyama
Journal:  Biochemistry       Date:  2005-03-22       Impact factor: 3.162

4.  Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

Authors:  Go Ueno; Hiroyuki Kanda; Takashi Kumasaka; Masaki Yamamoto
Journal:  J Synchrotron Radiat       Date:  2005-04-14       Impact factor: 2.616

5.  Characterization of cyanobacterial biliverdin reductase. Conversion of biliverdin to bilirubin is important for normal phycobiliprotein biosynthesis.

Authors:  W M Schluchter; A N Glazer
Journal:  J Biol Chem       Date:  1997-05-23       Impact factor: 5.157

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 7.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels.

Authors:  B Miroux; J E Walker
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

8.  Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC 6803 in complex with heme.

Authors:  Masakazu Sugishima; Catharina T Migita; Xuhong Zhang; Tadashi Yoshida; Keiichi Fukuyama
Journal:  Eur J Biochem       Date:  2004-11

9.  Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin.

Authors:  Yoshinori Hagiwara; Masakazu Sugishima; Yasuhiro Takahashi; Keiichi Fukuyama
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-27       Impact factor: 11.205

10.  Crystal structure of a biliverdin IXalpha reductase enzyme-cofactor complex.

Authors:  Frank G Whitby; John D Phillips; Christopher P Hill; William McCoubrey; Mahin D Maines
Journal:  J Mol Biol       Date:  2002-06-21       Impact factor: 5.469

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  1 in total

1.  A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity.

Authors:  Haruna Takao; Kei Hirabayashi; Yuki Nishigaya; Haruna Kouriki; Tetsuko Nakaniwa; Yoshinori Hagiwara; Jiro Harada; Hideaki Sato; Toshimasa Yamazaki; Yoichi Sakakibara; Masahito Suiko; Yujiro Asada; Yasuhiro Takahashi; Ken Yamamoto; Keiichi Fukuyama; Masakazu Sugishima; Kei Wada
Journal:  Nat Commun       Date:  2017-02-07       Impact factor: 14.919

  1 in total

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