Literature DB >> 21393570

Temporal dynamics of natural product biosynthesis in marine cyanobacteria.

Eduardo Esquenazi1, Adam C Jones, Tara Byrum, Pieter C Dorrestein, William H Gerwick.   

Abstract

Sessile marine organisms are prolific sources of biologically active natural products. However, these compounds are often found in highly variable amounts, with the abiotic and biotic factors governing their production remaining poorly understood. We present an approach that permits monitoring of in vivo natural product production and turnover using mass spectrometry and stable isotope ((15)N) feeding with small cultures of various marine strains of the natural product-rich cyanobacterial genus Lyngbya. This temporal comparison of the amount of in vivo (15)N labeling of nitrogen-containing metabolites represents a direct way to discover and evaluate factors influencing natural product biosynthesis, as well as the timing of specific steps in metabolite assembly, and is a strong complement to more traditional in vitro studies. Relative quantification of (15)N labeling allowed the concurrent measurement of turnover rates of multiple natural products from small amounts of biomass. This technique also afforded the production of the neurotoxic jamaicamides to be more carefully studied, including an assessment of how jamaicamide turnover compares with filament growth rate and primary metabolism and provided new insights into the biosynthetic timing of jamaicamide A bromination. This approach should be valuable in determining how environmental factors affect secondary metabolite production, ultimately yielding insight into the energetic balance among growth, primary production, and secondary metabolism, and thus aid in the development of methods to improve compound yields for biomedical or biotechnological applications.

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Year:  2011        PMID: 21393570      PMCID: PMC3069200          DOI: 10.1073/pnas.1012813108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

Review 1.  The unique mechanistic transformations involved in the biosynthesis of modular natural products from marine cyanobacteria.

Authors:  Adam C Jones; Emily A Monroe; Eli B Eisman; Lena Gerwick; David H Sherman; William H Gerwick
Journal:  Nat Prod Rep       Date:  2010-05-04       Impact factor: 13.423

2.  Biosynthetic origin of natural products isolated from marine microorganism-invertebrate assemblages.

Authors:  T Luke Simmons; R Cameron Coates; Benjamin R Clark; Niclas Engene; David Gonzalez; Eduardo Esquenazi; Pieter C Dorrestein; William H Gerwick
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

3.  Organization, evolution, and expression analysis of the biosynthetic gene cluster for scytonemin, a cyanobacterial UV-absorbing pigment.

Authors:  Carla M Sorrels; Philip J Proteau; William H Gerwick
Journal:  Appl Environ Microbiol       Date:  2009-05-29       Impact factor: 4.792

4.  Resource availability and plant antiherbivore defense.

Authors:  P D Coley; J P Bryant; F S Chapin
Journal:  Science       Date:  1985-11-22       Impact factor: 47.728

5.  Rapid typing and elucidation of new secondary metabolites of intact cyanobacteria using MALDI-TOF mass spectrometry.

Authors:  M Erhard; H von Döhren; P Jungblut
Journal:  Nat Biotechnol       Date:  1997-09       Impact factor: 54.908

6.  Chemical deterrence of a cyanobacterial metabolite against generalized and specialized grazers.

Authors:  Edwin Cruz-Rivera; Valerie J Paul
Journal:  J Chem Ecol       Date:  2006-10-25       Impact factor: 2.626

7.  15N-labeling to determine chlorophyll synthesis and degradation in Synechocystis sp. PCC 6803 strains lacking one or both photosystems.

Authors:  Dmitrii Vavilin; Daniel C Brune; Wim Vermaas
Journal:  Biochim Biophys Acta       Date:  2005-01-12

8.  A mass spectrometry method for measuring 15N incorporation into pheophytin.

Authors:  Michael L Kahn; Adriana Parra-Colmenares; Christine L Ford; Forest Kaser; David McCaskill; Raymond E Ketchum
Journal:  Anal Biochem       Date:  2002-08-15       Impact factor: 3.365

9.  Temperature-responsive sensing regulates biocontrol factor expression in Pseudomonas fluorescens CHA0.

Authors:  Bérénice Humair; Nicolas González; Dimitris Mossialos; Cornelia Reimmann; Dieter Haas
Journal:  ISME J       Date:  2009-05-07       Impact factor: 10.302

10.  Transcriptional analysis of the jamaicamide gene cluster from the marine cyanobacterium Lyngbya majuscula and identification of possible regulatory proteins.

Authors:  Adam C Jones; Lena Gerwick; David Gonzalez; Pieter C Dorrestein; William H Gerwick
Journal:  BMC Microbiol       Date:  2009-12-01       Impact factor: 3.605

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  15 in total

1.  Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses.

Authors:  Daniel W Udwary; Erin A Gontang; Adam C Jones; Carla S Jones; Andrew W Schultz; Jaclyn M Winter; Jane Y Yang; Nicholas Beauchemin; Todd L Capson; Benjamin R Clark; Eduardo Esquenazi; Alessandra S Eustáquio; Kelle Freel; Lena Gerwick; William H Gerwick; David Gonzalez; Wei-Ting Liu; Karla L Malloy; Katherine N Maloney; Markus Nett; Joshawna K Nunnery; Kevin Penn; Alejandra Prieto-Davo; Thomas L Simmons; Sara Weitz; Micheal C Wilson; Louis S Tisa; Pieter C Dorrestein; Bradley S Moore
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

Review 2.  Enzymatic strategies and biocatalysts for amide bond formation: tricks of the trade outside of the ribosome.

Authors:  Anwesha Goswami; Steven G Van Lanen
Journal:  Mol Biosyst       Date:  2014-11-24

3.  A Maldiisotopic Approach to Discover Natural Products: Cryptomaldamide, a Hybrid Tripeptide from the Marine Cyanobacterium Moorea producens.

Authors:  Robin B Kinnel; Eduardo Esquenazi; Tiago Leao; Nathan Moss; Emily Mevers; Alban R Pereira; Emily A Monroe; Anton Korobeynikov; Thomas F Murray; David Sherman; Lena Gerwick; Pieter C Dorrestein; William H Gerwick
Journal:  J Nat Prod       Date:  2017-04-27       Impact factor: 4.050

Review 4.  Mass spectrometry tools and workflows for revealing microbial chemistry.

Authors:  Tal Luzzatto-Knaan; Alexey V Melnik; Pieter C Dorrestein
Journal:  Analyst       Date:  2015-08-07       Impact factor: 4.616

Review 5.  Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites.

Authors:  Brett C Covington; John A McLean; Brian O Bachmann
Journal:  Nat Prod Rep       Date:  2017-01-04       Impact factor: 13.423

6.  Probing the in vivo biosynthesis of scytonemin, a cyanobacterial ultraviolet radiation sunscreen, through small scale stable isotope incubation studies and MALDI-TOF mass spectrometry.

Authors:  Carla S Jones; Eduardo Esquenazi; Pieter C Dorrestein; William H Gerwick
Journal:  Bioorg Med Chem       Date:  2011-06-14       Impact factor: 3.641

7.  Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols.

Authors:  Max Crüsemann; Ellis C O'Neill; Charles B Larson; Alexey V Melnik; Dimitrios J Floros; Ricardo R da Silva; Paul R Jensen; Pieter C Dorrestein; Bradley S Moore
Journal:  J Nat Prod       Date:  2016-11-11       Impact factor: 4.050

8.  Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.

Authors:  Adam C Jones; Emily A Monroe; Sheila Podell; Wolfgang R Hess; Sven Klages; Eduardo Esquenazi; Sherry Niessen; Heather Hoover; Michael Rothmann; Roger S Lasken; John R Yates; Richard Reinhardt; Michael Kube; Michael D Burkart; Eric E Allen; Pieter C Dorrestein; William H Gerwick; Lena Gerwick
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-09       Impact factor: 11.205

Review 9.  The chemical ecology of cyanobacteria.

Authors:  Pedro N Leão; Niclas Engene; Agostinho Antunes; William H Gerwick; Vitor Vasconcelos
Journal:  Nat Prod Rep       Date:  2012-01-12       Impact factor: 13.423

10.  Codon randomization for rapid exploration of chemical space in thiopeptide antibiotic variants.

Authors:  Travis S Young; Pieter C Dorrestein; Christopher T Walsh
Journal:  Chem Biol       Date:  2012-12-21
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