| Literature DB >> 21392431 |
Linda Verhoef1, Roger D Kouyos, Harry Vennema, Annelies Kroneman, Joukje Siebenga, Wilfrid van Pelt, Marion Koopmans.
Abstract
International foodborne norovirus outbreaks can be difficult to recognize when using standard outbreak investigation methods. In a novel approach, we provide step-wise selection criteria to identify clusters of outbreaks that may involve an internationally distributed common foodborne source. After computerized linking of epidemiologic data to aligned sequences, we retrospectively identified 100 individually reported outbreaks that potentially represented 14 international common source events in Europe during 1999-2008. Analysis of capsid sequences of outbreak strains (n = 1,456), showed that ≈7% of outbreaks reported to the Foodborne Viruses in Europe database were part of an international event (range 2%-9%), compared with 0.4% identified through standard epidemiologic investigations. Our findings point to a critical gap in surveillance and suggest that international collaboration could have increased the number of recognized international foodborne outbreaks. Real-time exchange of combined epidemiologic and molecular data is needed to validate our findings through timely trace-backs of clustered outbreaks.Entities:
Mesh:
Year: 2011 PMID: 21392431 PMCID: PMC3166008 DOI: 10.3201/eid1703.100979
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
FigureSelection of foodborne (FB) clusters of strains potentially representing internationally disseminated common-source outbreaks. Selection involved 6 steps, according to combined epidemiologic and molecular criteria. Each analyzed strain represented an outbreak. *See Table A1; †see Table A2.
Summary of aggregated data of clustered outbreak strains, sequences, and properties of the outbreaks within such clusters for each of the genotypes, 1999–2008.*
| GT | Total no. strains | No. (%) strains in clusters | No. (%) strains not in clusters | Minimum similarity within GT, % | Total no. clusters | Cluster size, range† | Cluster size, median† | No. (%) FB outbreak strains | No. sign possible FB clusters | No. (%) FHB outbreak strains | No. sign FHB clusters | No. (%) PB outbreak strains | No. sign PB clusters | No. (%) UN outbreak strains | No. sign UN clusters |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| I.1 | 24 | 19 (79) | 5 (21) | 91.2 | 4 | 2–7 | 5 | 8 (33)‡ | 1¶ | 0 | 0 | 2 (8) | 0 | 14 (58) | 0 |
| I.2 | 34 | 20 (59) | 14 (41) | 97.5 | 5 | 2–6 | 5 | 5 (15) | 1¶ | 0 | 0 | 0 | 0 | 29 (85)§ | 0 |
| I.3 | 43 | 16 (37) | 27 (63) | 78.3 | 5 | 2–6 | 4 | 6 (14) | 1¶ | 0 | 0 | 2 (5) | 0 | 35 (81) | 0 |
| I.4 | 40 | 23 (58) | 17 (42) | 94.8 | 8 | 2–5 | 2 | 8 (20)‡ | 1¶ | 2 (5)‡ | 1¶ | 0 | 0 | 30 (75) | 0 |
| I.5 | 6 | 5 (83) | 1 (17) | 93.1 | 2 | 2–3 | 2.5 | 2 (33)§ | 0 | 0 | 0 | 0 | 0 | 4 (67) | 0 |
| I.6 | 20 | 13 (65) | 7 (35) | 88.7 | 4 | 2–5 | 3 | 4 (20)§ | 1# | 1 (5)§ | 0 | 2 (10) | 0 | 13 (65) | 0 |
| II.1** | 28 | 10 (36) | 18 (64) | 90.9 | 4 | 2–3 | 2.5 | 6 (21)‡ | 0 | 0 | 0 | 12 (43)‡ | 0 | 10 (36) | 0 |
| II.2 | 30 | 9 (29) | 21 (71) | 82.4 | 4 | 2–3 | 2 | 11 (37)‡ | 0 | 0 | 0 | 3 (10) | 0 | 16 (53) | 0 |
| II.3** | 136 | 70 (52) | 66 (48) | 90.5 | 14 | 2–15 | 3 | 15 (11) | 0 | 0 | 0 | 35 (26)‡ | 4¶# | 86 (63) | 0 |
| II.4** | 950 | 691 (73) | 254 (27) | 82.4 | 47 | 2–361 | 3 | 41 (4) | 3¶# | 2†† | 0 | 178 (19)§ | 3¶# | 729 (77)‡ | 4¶# |
| II.5 | 3 | 2 (66) | 1 (33) | 97.0 | 1 | 2 | 2 | 1 (33) | 0 | 0 | 0 | 0 (0) | 0 | 2 (67) | 0 |
| II.6** | 54 | 30 (56) | 24 (44) | 92.0 | 8 | 2–15 | 2 | 11 (20)‡ | 1¶ | 1 (2) | 0 | 6 (11) | 1¶ | 36 (67) | 0 |
| II.7 | 57 | 39 (68) | 18 (32) | 96.2 | 4 | 2–28 | 3 | 13 (23)‡ | 1# | 0 | 0 | 6 (11) | 1¶ | 38 (67) | 0 |
| II.8 | 4 | 2 (50) | 2 (50) | 96.0 | 1 | 2 | 2 | 2 (50)‡ | 0 | 0 | 0 | 0 (0) | 0 | 2 (50) | 0 |
| II.10 | 3 | 0 | 3 (100) | 97.0 | 0 | NA | NA | 0 | 0 | 0 | 0 | 2 (67)§ | 0 | 1 (33) | 0 |
| II.11 | 1 | 0 | 1 (100) | NA | 0 | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 0 |
| II.12 | 4 | 0 | 4 (100) | 93.9 | 0 | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 4 (100) | 0 |
| II.13 | 3 | 0 | 3 (100) | 96.6 | 0 | NA | NA | 1 (33) | 0 | 0 | 0 | 0 | 0 | 2 (67) | 0 |
| II.14 | 3 | 0 | 3 (100) | 99.5 | 0 | NA | NA | 1 (33) | 0 | 0 | 0 | 0 | 0 | 2 (67) | 0 |
| II.16 | 4 | 0 | 4 (100) | 97.5 | 0 | NA | NA | 0 | 0 | 0 | 0 | 1 (25) | 0 | 3 (75) | 0 |
| II.17 | 1 | 0 | 1 (100) | NA | 0 | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 0 |
| II.NA1 | 6 | 2 (50) | 4 (50) | 94.2 | 1 | 2 | 2 | 0 | 0 | 0 | 0 | 2 (50) | 0 | 2 (50) | 0 |
| II.NA3 | 1 | 0 | 1 (100) | NA | 0 | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 0 |
| Overall | 1456 | 938 (64) | 518 (36) | 112 | 2–364 | 136 (9) | 10 | 6†† | 1 | 252 (17) | 9 | 1062 (73) | 4 |
*GT, genotype; FB, foodborne; FHB, food-handler borne; PB, person-borne; UN, unknown; NA, not applicable.
†Size of a strain cluster is the number of outbreak-representative strains within a molecular cluster of outbreaks, i.e., 2–7 outbreaks (not 2–7 patients per outbreak)
‡Genotypes with significantly higher proportion (p<0.05) of outbreaks with this transmission mode, when compared to the proportion in the total sequence population.
§Genotypes with borderline significantly higher proportion (0.05
Characteristics of 29 strain sequence clusters with identical capsid sequences that may share a common exposure through food, 1999–2008*
*Outbreak clusters were selected based on one of 3 criteria: 2a) genotype preferentially found in food-borne outbreaks; 2b) food-borne mode of transmission more commonly reported for cluster and 2c) specific food item more commonly reported in given cluster of outbreaks. Outbreak clusters in boldface were international outbreaks newly identified through the analysis in this study, other international outbreak clusters had already been reported as (suspected) common source events. FBVE, Food-Borne Viruses in Europe; GT, genotype; UN, unknown; FR, France; HU, Hungary; GB, Great Britain; FB, foodborne; NL, Netherlands; SE, Sweden; FHB, foodhandler-borne; RTE, ready-to-eat; DK, Denmark; IE, Ireland; PTP, person-to-person; IT, Italy; PL, Poland. †Frequency of transmission modes as reported for the single outbreaks within the specific cluster were considered a random draw from the frequencies of this transmission mode from the background population in the Food-borne Viruses in Europe database, i.e., as random draws from a binomial distribution. p values <0.10 were considered significant or borderline significant. p values >0.10 were considered nonsignificant. However, for clusters with none of the transmission modes ending up with a significant p value, the transmission mode with the smallest p value was chosen and presented with a question mark (?).
2 countries.