Literature DB >> 21389983

The structural basis of agonist-induced activation in constitutively active rhodopsin.

Jörg Standfuss1, Patricia C Edwards, Aaron D'Antona, Maikel Fransen, Guifu Xie, Daniel D Oprian, Gebhard F X Schertler.   

Abstract

G-protein-coupled receptors (GPCRs) comprise the largest family of membrane proteins in the human genome and mediate cellular responses to an extensive array of hormones, neurotransmitters and sensory stimuli. Although some crystal structures have been determined for GPCRs, most are for modified forms, showing little basal activity, and are bound to inverse agonists or antagonists. Consequently, these structures correspond to receptors in their inactive states. The visual pigment rhodopsin is the only GPCR for which structures exist that are thought to be in the active state. However, these structures are for the apoprotein, or opsin, form that does not contain the agonist all-trans retinal. Here we present a crystal structure at a resolution of 3 Å for the constitutively active rhodopsin mutant Glu 113 Gln in complex with a peptide derived from the carboxy terminus of the α-subunit of the G protein transducin. The protein is in an active conformation that retains retinal in the binding pocket after photoactivation. Comparison with the structure of ground-state rhodopsin suggests how translocation of the retinal β-ionone ring leads to a rotation of transmembrane helix 6, which is the critical conformational change on activation. A key feature of this conformational change is a reorganization of water-mediated hydrogen-bond networks between the retinal-binding pocket and three of the most conserved GPCR sequence motifs. We thus show how an agonist ligand can activate its GPCR.

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Year:  2011        PMID: 21389983      PMCID: PMC3715716          DOI: 10.1038/nature09795

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  43 in total

1.  Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.

Authors:  Olaf Fritze; Sławomir Filipek; Vladimir Kuksa; Krzysztof Palczewski; Klaus Peter Hofmann; Oliver P Ernst
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

2.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

3.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

4.  Local peptide movement in the photoreaction intermediate of rhodopsin.

Authors:  Hitoshi Nakamichi; Tetsuji Okada
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

5.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

6.  Structure and function in rhodopsin: a tetracycline-inducible system in stable mammalian cell lines for high-level expression of opsin mutants.

Authors:  Philip J Reeves; Jong-Myoung Kim; H Gobind Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-07       Impact factor: 11.205

Review 7.  The structure and function of G-protein-coupled receptors.

Authors:  Daniel M Rosenbaum; Søren G F Rasmussen; Brian K Kobilka
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

8.  Site of G protein binding to rhodopsin mapped with synthetic peptides from the alpha subunit.

Authors:  H E Hamm; D Deretic; A Arendt; P A Hargrave; B Koenig; K P Hofmann
Journal:  Science       Date:  1988-08-12       Impact factor: 47.728

9.  Microscale fluorescent thermal stability assay for membrane proteins.

Authors:  Alexander I Alexandrov; Mauro Mileni; Ellen Y T Chien; Michael A Hanson; Raymond C Stevens
Journal:  Structure       Date:  2008-03       Impact factor: 5.006

10.  Dark isomerization of retinals in the presence of phosphatidylethanolamine.

Authors:  G W Groenendijk; C W Jacobs; S L Bonting; F J Daemen
Journal:  Eur J Biochem       Date:  1980-05
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  215 in total

1.  The third extracellular loop of the human calcitonin receptor-like receptor is crucial for the activation of adrenomedullin signalling.

Authors:  Kenji Kuwasako; Debbie L Hay; Sayaka Nagata; Tomomi Hikosaka; Kazuo Kitamura; Johji Kato
Journal:  Br J Pharmacol       Date:  2012-05       Impact factor: 8.739

2.  Allosteric modulation of seven transmembrane spanning receptors: theory, practice, and opportunities for central nervous system drug discovery.

Authors:  Bruce J Melancon; Corey R Hopkins; Michael R Wood; Kyle A Emmitte; Colleen M Niswender; Arthur Christopoulos; P Jeffrey Conn; Craig W Lindsley
Journal:  J Med Chem       Date:  2012-01-06       Impact factor: 7.446

3.  Structural aspects of M₃ muscarinic acetylcholine receptor dimer formation and activation.

Authors:  Jianxin Hu; Doreen Thor; Yaru Zhou; Tong Liu; Yan Wang; Sara M McMillin; Rajendra Mistry; R A John Challiss; Stefano Costanzi; Jürgen Wess
Journal:  FASEB J       Date:  2011-10-26       Impact factor: 5.191

4.  Structural determinants of ubiquitin-CXC chemokine receptor 4 interaction.

Authors:  Vikas Saini; Adriano Marchese; Wei-Jen Tang; Matthias Majetschak
Journal:  J Biol Chem       Date:  2011-10-28       Impact factor: 5.157

5.  Signaling by sensory receptors.

Authors:  David Julius; Jeremy Nathans
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

6.  Structural, energetic, and mechanical perturbations in rhodopsin mutant that causes congenital stationary night blindness.

Authors:  Shiho Kawamura; Alejandro T Colozo; Lin Ge; Daniel J Müller; Paul S-H Park
Journal:  J Biol Chem       Date:  2012-05-01       Impact factor: 5.157

7.  Assembly of an activated rhodopsin-transducin complex in nanoscale lipid bilayers.

Authors:  Aaron M D'Antona; Guifu Xie; Stephen G Sligar; Daniel D Oprian
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

8.  Gating function of isoleucine-116 in TM-3 (position III:16/3.40) for the activity state of the CC-chemokine receptor 5 (CCR5).

Authors:  A Steen; A H Sparre-Ulrich; S Thiele; D Guo; T M Frimurer; M M Rosenkilde
Journal:  Br J Pharmacol       Date:  2014-03       Impact factor: 8.739

9.  Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures.

Authors:  Nicholas Leioatts; Blake Mertz; Karina Martínez-Mayorga; Tod D Romo; Michael C Pitman; Scott E Feller; Alan Grossfield; Michael F Brown
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.162

10.  Beyond spectral tuning: human cone visual pigments adopt different transient conformations for chromophore regeneration.

Authors:  Sundaramoorthy Srinivasan; Arnau Cordomí; Eva Ramon; Pere Garriga
Journal:  Cell Mol Life Sci       Date:  2015-09-19       Impact factor: 9.261

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