Literature DB >> 16908857

Local peptide movement in the photoreaction intermediate of rhodopsin.

Hitoshi Nakamichi1, Tetsuji Okada.   

Abstract

Photoactivation of the visual rhodopsin, a prototypical G protein-coupled receptor (GPCR), involves efficient conversion of the intrinsic inverse-agonist 11-cis-retinal to the all-trans agonist. This event leads to the rearrangement of the heptahelical transmembrane bundle, which is thought to be shared by hundreds of GPCRs. To examine this activation mechanism, we determined the x-ray crystallographic model of the photoreaction intermediate of rhodopsin, lumirhodopsin, which represents the conformational state having the nearly complete all-trans agonist form of the retinal. A difference electron density map clearly indicated that the distorted all-trans-retinal in the precedent intermediate bathorhodopsin relaxes by dislocation of the beta-ionone ring in lumirhodopsin, along with significant peptide displacement in the middle of helix III, including approximately two helical turns. This local movement results in the breaking of the electrostatic interhelical restraints mediated by many of the conserved residues among rhodopsin-like GPCRs, with consequent acquisition of full activity.

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Year:  2006        PMID: 16908857      PMCID: PMC1562544          DOI: 10.1073/pnas.0601765103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Movement of retinal along the visual transduction path.

Authors:  B Borhan; M L Souto; H Imai; Y Shichida; K Nakanishi
Journal:  Science       Date:  2000-06-23       Impact factor: 47.728

2.  Deformation of helix C in the low temperature L-intermediate of bacteriorhodopsin.

Authors:  Karl Edman; Antoine Royant; Gisela Larsson; Frida Jacobson; Tom Taylor; David van der Spoel; Ehud M Landau; Eva Pebay-Peyroula; Richard Neutze
Journal:  J Biol Chem       Date:  2003-10-07       Impact factor: 5.157

3.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

Review 4.  Molecular mechanisms of ligand binding, signaling, and regulation within the superfamily of G-protein-coupled receptors: molecular modeling and mutagenesis approaches to receptor structure and function.

Authors:  Kurt Kristiansen
Journal:  Pharmacol Ther       Date:  2004-07       Impact factor: 12.310

5.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

6.  Detecting and overcoming crystal twinning.

Authors:  T O Yeates
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Fourier transform infrared difference spectra of intermediates in rhodopsin bleaching.

Authors:  K J Rothschild; W A Cantore; H Marrero
Journal:  Science       Date:  1983-03-18       Impact factor: 47.728

Review 8.  Crystal structure of rhodopsin: implications for vision and beyond.

Authors:  T Okada; K Palczewski
Journal:  Curr Opin Struct Biol       Date:  2001-08       Impact factor: 6.809

9.  Partial agonist activity of 11-cis-retinal in rhodopsin mutants.

Authors:  M Han; J Lou; K Nakanishi; T P Sakmar; S O Smith
Journal:  J Biol Chem       Date:  1997-09-12       Impact factor: 5.157

10.  Rhodopsin-lumirhodopsin phototransition of bovine rhodopsin investigated by Fourier transform infrared difference spectroscopy.

Authors:  U M Ganter; W Gärtner; F Siebert
Journal:  Biochemistry       Date:  1988-09-20       Impact factor: 3.162

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  80 in total

Review 1.  Chemistry and biology of vision.

Authors:  Krzysztof Palczewski
Journal:  J Biol Chem       Date:  2011-11-10       Impact factor: 5.157

Review 2.  The significance of G protein-coupled receptor crystallography for drug discovery.

Authors:  John A Salon; David T Lodowski; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2011-12       Impact factor: 25.468

Review 3.  New insights for drug design from the X-ray crystallographic structures of G-protein-coupled receptors.

Authors:  Kenneth A Jacobson; Stefano Costanzi
Journal:  Mol Pharmacol       Date:  2012-06-13       Impact factor: 4.436

Review 4.  Complexes between photoactivated rhodopsin and transducin: progress and questions.

Authors:  Beata Jastrzebska; Yaroslav Tsybovsky; Krzysztof Palczewski
Journal:  Biochem J       Date:  2010-04-28       Impact factor: 3.857

5.  Putative active states of a prototypic g-protein-coupled receptor from biased molecular dynamics.

Authors:  Davide Provasi; Marta Filizola
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

6.  Molecular dynamics simulations reveal specific interactions of post-translational palmitoyl modifications with rhodopsin in membranes.

Authors:  Bjoern E S Olausson; Alan Grossfield; Michael C Pitman; Michael F Brown; Scott E Feller; Alexander Vogel
Journal:  J Am Chem Soc       Date:  2012-02-22       Impact factor: 15.419

7.  Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures.

Authors:  Nicholas Leioatts; Blake Mertz; Karina Martínez-Mayorga; Tod D Romo; Michael C Pitman; Scott E Feller; Alan Grossfield; Michael F Brown
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.162

8.  Location of the retinal chromophore in the activated state of rhodopsin*.

Authors:  Shivani Ahuja; Evan Crocker; Markus Eilers; Viktor Hornak; Amiram Hirshfeld; Martine Ziliox; Natalie Syrett; Philip J Reeves; H Gobind Khorana; Mordechai Sheves; Steven O Smith
Journal:  J Biol Chem       Date:  2009-01-28       Impact factor: 5.157

9.  Influence of Arrestin on the Photodecay of Bovine Rhodopsin.

Authors:  Deep Chatterjee; Carl Elias Eckert; Chavdar Slavov; Krishna Saxena; Boris Fürtig; Charles R Sanders; Vsevolod V Gurevich; Josef Wachtveitl; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-18       Impact factor: 15.336

10.  Light activation of rhodopsin: insights from molecular dynamics simulations guided by solid-state NMR distance restraints.

Authors:  Viktor Hornak; Shivani Ahuja; Markus Eilers; Joseph A Goncalves; Mordechai Sheves; Philip J Reeves; Steven O Smith
Journal:  J Mol Biol       Date:  2009-12-11       Impact factor: 5.469

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