Literature DB >> 21380773

Selectivity sequences in a model calcium channel: role of electrostatic field strength.

Daniel Krauss1, Bob Eisenberg, Dirk Gillespie.   

Abstract

The energetics that give rise to selectivity sequences of ionic binding selectivity of Li(+), Na(+), K(+), Rb(+), and Cs(+) in a model of a calcium channel are considered. This work generalizes Eisenman's classic treatment (Biophys J 2(Suppl. 2):259, 1962) by including multiple, mobile binding site oxygens that coordinate many permeating ions (all modeled as charged, hard spheres). The selectivity filter of the model calcium channel allows the carboxyl terminal groups of glutamate and aspartate side chains to directly interact with and coordinate the permeating ions. Ion dehydration effects are represented with a Born energy between the dielectric coefficients of the selectivity filter and the bath. High oxygen concentration creates a high field strength site that prefers small ions, as in Eisenman's model. On the other hand, a low filter dielectric constant also creates a high field strength site, but this site prefers large ions, contrary to Eisenman's model. These results indicate that field strength does not have a unique effect on ionic binding selectivity sequences once entropic, electrostatic, and dehydration forces are included in the model. Thus, Eisenman's classic relationship between field strength and selectivity sequences must be supplemented with additional information about selectivity filters such as the calcium channel that has amino acid side chains mixing with ions to make a crowded permeation pathway.

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Year:  2011        PMID: 21380773      PMCID: PMC3124256          DOI: 10.1007/s00249-011-0691-6

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  27 in total

1.  Ca2+ transport properties and determinants of anomalous mole fraction effects of single voltage-gated Ca2+ channels in hair cells from bullfrog saccule.

Authors:  Adrian Rodriguez-Contreras; Wolfgang Nonner; Ebenezer N Yamoah
Journal:  J Physiol       Date:  2002-02-01       Impact factor: 5.182

2.  Binding and selectivity in L-type calcium channels: a mean spherical approximation.

Authors:  W Nonner; L Catacuzzeno; B Eisenberg
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

3.  Cation selective glass electrodes and their mode of operation.

Authors:  G EISENMAN
Journal:  Biophys J       Date:  1962-03       Impact factor: 4.033

4.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

5.  Sieving experiments and pore diameter: it's not a simple relationship.

Authors:  Daniel Krauss; Dirk Gillespie
Journal:  Eur Biophys J       Date:  2010-05-11       Impact factor: 1.733

Review 6.  Structure and function of channels and channelogs as studied by computational chemistry.

Authors:  G Eisenman; O Alvarez
Journal:  J Membr Biol       Date:  1991-01       Impact factor: 1.843

7.  Ion permeation and glutamate residues linked by Poisson-Nernst-Planck theory in L-type calcium channels.

Authors:  W Nonner; B Eisenberg
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

Review 9.  Ionic selectivity revisited: the role of kinetic and equilibrium processes in ion permeation through channels.

Authors:  G Eisenman; R Horn
Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

10.  (De)constructing the ryanodine receptor: modeling ion permeation and selectivity of the calcium release channel.

Authors:  Dirk Gillespie; Le Xu; Ying Wang; Gerhard Meissner
Journal:  J Phys Chem B       Date:  2005-08-18       Impact factor: 2.991

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  6 in total

Review 1.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

2.  Pendrin function and regulation in Xenopus oocytes.

Authors:  Fabian R Reimold; John F Heneghan; Andrew K Stewart; Israel Zelikovic; David H Vandorpe; Boris E Shmukler; Seth L Alper
Journal:  Cell Physiol Biochem       Date:  2011-11-16

3.  Current and selectivity in a model sodium channel under physiological conditions: Dynamic Monte Carlo simulations.

Authors:  Eva Csányi; Dezso Boda; Dirk Gillespie; Tamás Kristóf
Journal:  Biochim Biophys Acta       Date:  2011-11-04

4.  Selecting ions by size in a calcium channel: the ryanodine receptor case study.

Authors:  Dirk Gillespie; Le Xu; Gerhard Meissner
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

5.  Selective lithium ion recognition in self-assembled columnar liquid crystals based on a lithium receptor.

Authors:  Yuan Luo; Nicolas Marets; Takashi Kato
Journal:  Chem Sci       Date:  2017-11-01       Impact factor: 9.825

6.  Sodium channel selectivity and conduction: prokaryotes have devised their own molecular strategy.

Authors:  Rocio K Finol-Urdaneta; Yibo Wang; Ahmed Al-Sabi; Chunfeng Zhao; Sergei Y Noskov; Robert J French
Journal:  J Gen Physiol       Date:  2014-01-13       Impact factor: 4.086

  6 in total

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