Literature DB >> 21378854

Force-activated reactivity switch in a bimolecular chemical reaction.

Sergi Garcia-Manyes1, Jian Liang, Robert Szoszkiewicz, Tzu-Ling Kuo, Julio M Fernández.   

Abstract

The effect of mechanical force on the free-energy surface that governs a chemical reaction is largely unknown. The combination of protein engineering with single-molecule force-clamp spectroscopy allows us to study the influence of mechanical force on the rate at which a protein disulfide bond is reduced by nucleophiles in a bimolecular substitution reaction (S(N)2). We found that cleavage of a protein disulfide bond by hydroxide anions exhibits an abrupt reactivity 'switch' at ∼500 pN, after which the accelerating effect of force on the rate of an S(N)2 chemical reaction greatly diminishes. We propose that an abrupt force-induced conformational change of the protein disulfide bond shifts its ground state, drastically changing its reactivity in S(N)2 chemical reactions. Our experiments directly demonstrate the action of a force-activated switch in the chemical reactivity of a single molecule.

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Year:  2009        PMID: 21378854     DOI: 10.1038/nchem.207

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  28 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM.

Authors:  Piotr E Marszalek; Hongbin Li; Andres F Oberhauser; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

3.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

4.  Mechanochemistry: the mechanical activation of covalent bonds.

Authors:  Martin K Beyer; Hauke Clausen-Schaumann
Journal:  Chem Rev       Date:  2005-08       Impact factor: 60.622

5.  Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques.

Authors:  Arun P Wiita; Sri Rama Koti Ainavarapu; Hector H Huang; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-27       Impact factor: 11.205

6.  Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Authors:  Sri Rama Koti Ainavarapu; Jasna Brujic; Hector H Huang; Arun P Wiita; Hui Lu; Lewyn Li; Kirstin A Walther; Mariano Carrion-Vazquez; Hongbin Li; Julio M Fernandez
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

7.  Origins of material failure in siloxane elastomers from first principles.

Authors:  Elizabeth M Lupton; Frank Achenbach; Johann Weis; Christoph Bräuchle; Irmgard Frank
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

8.  Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction.

Authors:  Sri Rama Koti Ainavarapu; Arun P Wiita; Lorna Dougan; Einar Uggerud; Julio M Fernandez
Journal:  J Am Chem Soc       Date:  2008-04-24       Impact factor: 15.419

Review 9.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

10.  Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring.

Authors:  P E Marszalek; A F Oberhauser; Y P Pang; J M Fernandez
Journal:  Nature       Date:  1998-12-17       Impact factor: 49.962

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  24 in total

1.  Biophysics: Breaking out of the cage.

Authors:  Chia-Ching Chou; Markus J Buehler
Journal:  Nat Chem       Date:  2011-10-24       Impact factor: 24.427

2.  Mechanical force can fine-tune redox potentials of disulfide bonds.

Authors:  Ilona B Baldus; Frauke Gräter
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  The Janus-faced role of external forces in mechanochemical disulfide bond cleavage.

Authors:  Przemyslaw Dopieralski; Jordi Ribas-Arino; Padmesh Anjukandi; Martin Krupicka; Janos Kiss; Dominik Marx
Journal:  Nat Chem       Date:  2013-06-16       Impact factor: 24.427

4.  Single-molecule mechanics: Breaking bonds at a stretch.

Authors:  Irmgard Frank; Florian Hofbauer
Journal:  Nat Chem       Date:  2009-05-10       Impact factor: 24.427

5.  Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein.

Authors:  Ionel Popa; Julio M Fernández; Sergi Garcia-Manyes
Journal:  J Biol Chem       Date:  2011-07-16       Impact factor: 5.157

6.  Kinetic measurements on single-molecule disulfide bond cleavage.

Authors:  Jian Liang; Julio M Fernández
Journal:  J Am Chem Soc       Date:  2011-02-22       Impact factor: 15.419

7.  Identification of allosteric disulfides from prestress analysis.

Authors:  Beifei Zhou; Ilona B Baldus; Wenjin Li; Scott A Edwards; Frauke Gräter
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

Review 8.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

9.  Mechanochemistry: one bond at a time.

Authors:  Jian Liang; Julio M Fernández
Journal:  ACS Nano       Date:  2009-07-02       Impact factor: 15.881

10.  A backbone lever-arm effect enhances polymer mechanochemistry.

Authors:  Hope M Klukovich; Tatiana B Kouznetsova; Zachary S Kean; Jeremy M Lenhardt; Stephen L Craig
Journal:  Nat Chem       Date:  2012-12-23       Impact factor: 24.427

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