Literature DB >> 21378191

Complete genome sequence of the proteolytic Clostridium botulinum type A5 (B3') strain H04402 065.

Andrew T Carter1, Bruce M Pearson, Lisa C Crossman, Nizar Drou, Darren Heavens, David Baker, Melanie Febrer, Mario Caccamo, Kathie A Grant, Michael W Peck.   

Abstract

H04402 065 is one of a very small group of strains of proteolytic Clostridium botulinum that form type A5 neurotoxin. Here, we report the complete 3.9-Mb genome sequence and annotation of strain H04402 065, which was isolated from a botulism patient in the United Kingdom in 2004.

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Year:  2011        PMID： 21378191      PMCID： PMC3133084          DOI： 10.1128/JB.00072-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Novel Clostridium botulinum toxin gene arrangement with subtype A5 and partial subtype B3 botulinum neurotoxin genes.

Authors:  Nir Dover; Jason R Barash; Stephen S Arnon
Journal:  J Clin Microbiol       Date:  2009-05-06       Impact factor: 5.948

5.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

Review 6.  Wound botulism in injectors of drugs: upsurge in cases in England during 2004.

Authors:  D Akbulut; J Dennis; M Gent; K A Grant; V Hope; C Ohai; J McLauchlin; V Mithani; O Mpamugo; F Ncube; L de Souza-Thomas
Journal:  Euro Surveill       Date:  2005-09

Review 7.  Clostridium botulinum in the post-genomic era.

Authors:  Michael W Peck; Sandra C Stringer; Andrew T Carter
Journal:  Food Microbiol       Date:  2010-03-17       Impact factor: 5.516

Review 8.  Biology and genomic analysis of Clostridium botulinum.

Authors:  Michael W Peck
Journal:  Adv Microb Physiol       Date:  2009       Impact factor: 3.517

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains.

Authors:  Karen K Hill; Gary Xie; Brian T Foley; Theresa J Smith; Amy C Munk; David Bruce; Leonard A Smith; Thomas S Brettin; John C Detter
Journal:  BMC Biol       Date:  2009-10-05       Impact factor: 7.431
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  11 in total

1.  Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains.

Authors:  Narjol Gonzalez-Escalona; Ruth Timme; Brian H Raphael; Donald Zink; Shashi K Sharma
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

2.  Draft Genome Sequence of Clostridium botulinum B2 450 Strain from Wound Botulism in a Drug User in Italy.

Authors:  Silvia Fillo; Francesco Giordani; Anna Anselmo; Antonella Fortunato; Anna Maria Palozzi; Riccardo De Santis; Andrea Ciammaruconi; Ferdinando Spagnolo; Fabrizio Anniballi; Alfonsina Fiore; Bruna Auricchio; Dario De Medici; Florigio Lista
Journal:  Genome Announc       Date:  2015-04-02

3.  Isolation and functional characterization of the novel Clostridium botulinum neurotoxin A8 subtype.

Authors:  Skadi Kull; K Melanie Schulz; Jasmin Weisemann; Sebastian Kirchner; Tanja Schreiber; Alexander Bollenbach; P Wojtek Dabrowski; Andreas Nitsche; Suzanne R Kalb; Martin B Dorner; John R Barr; Andreas Rummel; Brigitte G Dorner
Journal:  PLoS One       Date:  2015-02-06       Impact factor: 3.240

Review 4.  New Elements To Consider When Modeling the Hazards Associated with Botulinum Neurotoxin in Food.

Authors:  Adaoha E C Ihekwaba; Ivan Mura; Pradeep K Malakar; John Walshaw; Michael W Peck; G C Barker
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

Review 5.  Genomes, neurotoxins and biology of Clostridium botulinum Group I and Group II.

Authors:  Andrew T Carter; Michael W Peck
Journal:  Res Microbiol       Date:  2014-11-04       Impact factor: 3.992

6.  The type F6 neurotoxin gene cluster locus of group II clostridium botulinum has evolved by successive disruption of two different ancestral precursors.

Authors:  Andrew T Carter; Sandra C Stringer; Martin D Webb; Michael W Peck
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

7.  Diversity of Group I and II Clostridium botulinum Strains from France Including Recently Identified Subtypes.

Authors:  Christelle Mazuet; Christine Legeay; Jean Sautereau; Laurence Ma; Christiane Bouchier; Philippe Bouvet; Michel R Popoff
Journal:  Genome Biol Evol       Date:  2016-06-13       Impact factor: 3.416

8.  Closing Clostridium botulinum Group I Genomes Using a Combination of Short- and Long-Reads.

Authors:  Narjol Gonzalez-Escalona; Shashi K Sharma
Journal:  Front Microbiol       Date:  2020-02-19       Impact factor: 5.640

9.  Diversity of the Genomes and Neurotoxins of Strains of Clostridium botulinum Group I and Clostridium sporogenes Associated with Foodborne, Infant and Wound Botulism.

Authors:  Jason Brunt; Arnoud H M van Vliet; Andrew T Carter; Sandra C Stringer; Corinne Amar; Kathie A Grant; Gauri Godbole; Michael W Peck
Journal:  Toxins (Basel)       Date:  2020-09-11       Impact factor: 4.546

10.  A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.

Authors:  Lisa C Crossman; Huan Chen; Ana-M Cerdeño-Tárraga; Karen Brooks; Michael A Quail; Silvia A Pineiro; Laura Hobley; R Elizabeth Sockett; Stephen D Bentley; Julian Parkhill; Henry N Williams; O Colin Stine
Journal:  ISME J       Date:  2012-09-06       Impact factor: 10.302
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