Literature DB >> 21376655

A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography.

Iman Aganj1, Christophe Lenglet, Neda Jahanshad, Essa Yacoub, Noam Harel, Paul M Thompson, Guillermo Sapiro.   

Abstract

A global probabilistic fiber tracking approach based on the voting process provided by the Hough transform is introduced in this work. The proposed framework tests candidate 3D curves in the volume, assigning to each one a score computed from the diffusion images, and then selects the curves with the highest scores as the potential anatomical connections. The algorithm avoids local minima by performing an exhaustive search at the desired resolution. The technique is easily extended to multiple subjects, considering a single representative volume where the registered high-angular resolution diffusion images (HARDI) from all the subjects are non-linearly combined, thereby obtaining population-representative tracts. The tractography algorithm is run only once for the multiple subjects, and no tract alignment is necessary. We present experimental results on HARDI volumes, ranging from simulated and 1.5T physical phantoms to 7T and 4T human brain and 7T monkey brain datasets.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21376655      PMCID: PMC3115463          DOI: 10.1016/j.media.2011.01.003

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  43 in total

1.  Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI.

Authors:  D K Jones; A Simmons; S C Williams; M A Horsfield
Journal:  Magn Reson Med       Date:  1999-07       Impact factor: 4.668

Review 2.  A framework based on spin glass models for the inference of anatomical connectivity from diffusion-weighted MR data - a technical review.

Authors:  J-F Mangin; C Poupon; Y Cointepas; D Rivière; D Papadopoulos-Orfanos; C A Clark; J Régis; D Le Bihan
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

3.  A novel global tractography algorithm based on an adaptive spin glass model.

Authors:  Pierre Fillard; Cyril Poupon; Jean-François Mangin
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  White matter fiber tractography via anisotropic diffusion simulation in the human brain.

Authors:  Ning Kang; Jun Zhang; Eric S Carlson; Daniel Gembris
Journal:  IEEE Trans Med Imaging       Date:  2005-09       Impact factor: 10.048

5.  A Bayesian approach for stochastic white matter tractography.

Authors:  Ola Friman; Gunnar Farnebäck; Carl-Fredrik Westin
Journal:  IEEE Trans Med Imaging       Date:  2006-08       Impact factor: 10.048

6.  MR diffusion-based inference of a fiber bundle model from a population of subjects.

Authors:  V El Kouby; Y Cointepas; C Poupon; D Rivière; N Golestani; J B Poline; D Le Bihan; J F Mangin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

7.  Brain tractography using Q-ball imaging and graph theory: Improved connectivities through fibre crossings via a model-based approach.

Authors:  Stamatios N Sotiropoulos; Li Bai; Paul S Morgan; Cris S Constantinescu; Christopher R Tench
Journal:  Neuroimage       Date:  2009-10-08       Impact factor: 6.556

8.  Meeting the Challenges of Neuroimaging Genetics.

Authors:  Greig I de Zubicaray; Ming-Chang Chiang; Katie L McMahon; David W Shattuck; Arthur W Toga; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Brain Imaging Behav       Date:  2008-12-01       Impact factor: 3.978

9.  Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography.

Authors:  Aristotle N Voineskos; Lauren J O'Donnell; Nancy J Lobaugh; Doug Markant; Stephanie H Ameis; Marc Niethammer; Benoit H Mulsant; Bruce G Pollock; James L Kennedy; Carl Fredrik Westin; Martha E Shenton
Journal:  Neuroimage       Date:  2008-12-29       Impact factor: 6.556

10.  Estimating distributed anatomical connectivity using fast marching methods and diffusion tensor imaging.

Authors:  Geoffrey J M Parker; Claudia A M Wheeler-Kingshott; Gareth J Barker
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

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  60 in total

1.  Altered structural brain connectivity in healthy carriers of the autism risk gene, CNTNAP2.

Authors:  Emily L Dennis; Neda Jahanshad; Jeffrey D Rudie; Jesse A Brown; Kori Johnson; Katie L McMahon; Greig I de Zubicaray; Grant Montgomery; Nicholas G Martin; Margaret J Wright; Susan Y Bookheimer; Mirella Dapretto; Arthur W Toga; Paul M Thompson
Journal:  Brain Connect       Date:  2011

2.  Relationship of a variant in the NTRK1 gene to white matter microstructure in young adults.

Authors:  Meredith N Braskie; Neda Jahanshad; Jason L Stein; Marina Barysheva; Kori Johnson; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Margaret J Wright; John M Ringman; Arthur W Toga; Paul M Thompson
Journal:  J Neurosci       Date:  2012-04-25       Impact factor: 6.167

3.  Predicting brain network changes in Alzheimer's disease with link prediction algorithms.

Authors:  Sadegh Sulaimany; Mohammad Khansari; Peyman Zarrineh; Madelaine Daianu; Neda Jahanshad; Paul M Thompson; Ali Masoudi-Nejad
Journal:  Mol Biosyst       Date:  2017-03-28

4.  Multi-View Graph Convolutional Network and Its Applications on Neuroimage Analysis for Parkinson's Disease.

Authors:  Xi Zhang; Lifang He; Kun Chen; Yuan Luo; Jiayu Zhou; Fei Wang
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

5.  Rich club analysis in the Alzheimer's disease connectome reveals a relatively undisturbed structural core network.

Authors:  Madelaine Daianu; Neda Jahanshad; Talia M Nir; Clifford R Jack; Michael W Weiner; Matt A Bernstein; Paul M Thompson
Journal:  Hum Brain Mapp       Date:  2015-06-03       Impact factor: 5.038

6.  Magnetic resonance field strength effects on diffusion measures and brain connectivity networks.

Authors:  Liang Zhan; Bryon A Mueller; Neda Jahanshad; Yan Jin; Christophe Lenglet; Essa Yacoub; Guillermo Sapiro; Kamil Ugurbil; Noam Harel; Arthur W Toga; Kelvin O Lim; Paul M Thompson
Journal:  Brain Connect       Date:  2013-01-30

7.  DISCOVERY OF GENES THAT AFFECT HUMAN BRAIN CONNECTIVITY: A GENOME-WIDE ANALYSIS OF THE CONNECTOME.

Authors:  Neda Jahanshad; Derrek P Hibar; April Ryles; Arthur W Toga; Katie L McMahon; Greig I de Zubicaray; Narelle K Hansell; Grant W Montgomery; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

8.  Disrupted brain networks in the aging HIV+ population.

Authors:  Neda Jahanshad; Victor G Valcour; Talia M Nir; Omid Kohannim; Edgar Busovaca; Krista Nicolas; Paul M Thompson
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9.  CHANGES IN ANATOMICAL BRAIN CONNECTIVITY BETWEEN AGES 12 AND 30: A HARDI STUDY OF 467 ADOLESCENTS AND ADULTS.

Authors:  Emily L Dennis; Neda Jahanshad; Arthur W Toga; Kori Johnson; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Ian B Hickie; Margaret J Wright; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

10.  Reprint of: Mapping connectivity in the developing brain.

Authors:  Emily L Dennis; Paul M Thompson
Journal:  Int J Dev Neurosci       Date:  2013-12-02       Impact factor: 2.457

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