Literature DB >> 21375247

Macromolecular crowding extended to a heptameric system: the Co-chaperonin protein 10.

Ximena Aguilar1, Christoph F Weise, Tobias Sparrman, Magnus Wolf-Watz, Pernilla Wittung-Stafshede.   

Abstract

Experiments on monomeric proteins have shown that macromolecular crowding can stabilize toward heat perturbation and also modulate native-state structure. To assess the effects of macromolecular crowding on unfolding of an oligomeric protein, we here tested the effects of the synthetic crowding agent Ficoll 70 on human cpn10 (GroES in E. coli), a heptameric protein consisting of seven identical β-barrel subunits assembling into a ring. Using far-UV circular dichroism (CD), tyrosine fluorescence, nuclear magnetic resonance (NMR), and cross-linking experiments, we investigated thermal and chemical stability, as well as the heptamer-monomer dissociation constant, without and with crowding agent. We find that crowding shifts the heptamer-monomer equilibrium constant in the direction of the heptamer. The cpn10 heptamer is both thermally and thermodynamically stabilized in 300 mg/mL Ficoll 70 as compared to regular buffer conditions. Kinetic unfolding experiments show that the increased stability in crowded conditions, in part, is explained by slower unfolding rates. A thermodynamic cycle reveals that in presence of 300 mg/mL Ficoll the thermodynamic stability of each cpn10 monomer increases by over 30%, whereas the interfaces are stabilized by less than 10%. We also introduce a new approach to analyze the spectroscopic data that makes use of multiple wavelengths: this provides robust error estimates of thermodynamic parameters.

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Year:  2011        PMID: 21375247     DOI: 10.1021/bi2002086

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

Review 1.  Protein-protein interactions in a crowded environment.

Authors:  Apratim Bhattacharya; Young C Kim; Jeetain Mittal
Journal:  Biophys Rev       Date:  2013-04-16

Review 2.  Effects of macromolecular crowding agents on protein folding in vitro and in silico.

Authors:  Alexander Christiansen; Qian Wang; Margaret S Cheung; Pernilla Wittung-Stafshede
Journal:  Biophys Rev       Date:  2013-02-19

3.  Crowding activates ClpB and enhances its association with DnaK for efficient protein aggregate reactivation.

Authors:  Ianire Martín; Garbiñe Celaya; Carlos Alfonso; Fernando Moro; Germán Rivas; Arturo Muga
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

Review 4.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

5.  Effect of r-Mt-Cpn10 on human osteoblast cells.

Authors:  Yuanyu Zhang; Xia Liu; Kun Li; Jingping Bai
Journal:  Int J Clin Exp Med       Date:  2014-09-15

6.  A physics-based approach of coarse-graining the cytoplasm of Escherichia coli (CGCYTO).

Authors:  Qian Wang; Margaret S Cheung
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

Review 7.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

Review 8.  Influence of crowded cellular environments on protein folding, binding, and oligomerization: biological consequences and potentials of atomistic modeling.

Authors:  Huan-Xiang Zhou
Journal:  FEBS Lett       Date:  2013-02-05       Impact factor: 4.124

9.  Chemically triggered crosslinking with bioorthogonal cyclopropenones.

Authors:  R David Row; Sean S Nguyen; Andrew J Ferreira; Jennifer A Prescher
Journal:  Chem Commun (Camb)       Date:  2020-09-17       Impact factor: 6.222

10.  Effects of crowding on the stability of a surface-tethered biopolymer: an experimental study of folding in a highly crowded regime.

Authors:  Herschel M Watkins; Anna J Simon; Francesco Ricci; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2014-06-11       Impact factor: 15.419

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