Literature DB >> 21370815

An evolutionary algorithm for the global optimization of molecular clusters: application to water, benzene, and benzene cation.

J L Llanio-Trujillo1, J M C Marques, F B Pereira.   

Abstract

We have developed an evolutionary algorithm (EA) for the global minimum search of molecular clusters. The EA is able to discover all the putative global minima of water clusters up to (H(2)O)(20) and benzene clusters up to (C(6)H(6))(30). Then, the EA was applied to search for the global minima structures of (C(6)H(6))(n)(+) with n = 2-20, some of which were theoretically studied for the first time. Our results for n = 2-6 are consistent with previous theoretical work that uses a similar interaction potential. Excluding the very symmetric global minimum structure for n = 9, the growth pattern of (C(6)H(6))(n)(+) with n ≥ 7 involves the (C(6)H(6))(2)(+) dimer motif, which is placed off-center in the cluster. Such observation indicates that potentials commonly used in the literature for (C(6)H(6))(n)(+) cannot reproduce the icosahedral-type packing suggested by the available experimental data.

Entities:  

Year:  2011        PMID: 21370815     DOI: 10.1021/jp1117695

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  Theoretical and computational studies of non-equilibrium and non-statistical dynamics in the gas phase, in the condensed phase and at interfaces.

Authors:  Riccardo Spezia; Emilio Martínez-Nuñez; Saulo Vazquez; William L Hase
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

Review 2.  A global optimization perspective on molecular clusters.

Authors:  J M C Marques; F B Pereira; J L Llanio-Trujillo; P E Abreu; M Albertí; A Aguilar; F Pirani; M Bartolomei
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

3.  A new active learning approach for adsorbate-substrate structural elucidation in silico.

Authors:  Maicon Pierre Lourenço; Lizandra Barrios Herrera; Jiří Hostaš; Patrizia Calaminici; Andreas M Köster; Alain Tchagang; Dennis R Salahub
Journal:  J Mol Model       Date:  2022-06-03       Impact factor: 1.810

4.  Editorial: Application of Optimization Algorithms in Chemistry.

Authors:  Jorge M C Marques; Emilio Martínez-Núñez; William L Hase
Journal:  Front Chem       Date:  2020-03-20       Impact factor: 5.221

5.  How solvent determines the molecular reactive conformation and the selectivity: Solvation spheres and energy.

Authors:  Joseelyne Hernández-Lima; Karla Ramírez-Gualito; Beatriz Quiroz-García; Ana Luisa Silva-Portillo; Ernesto Carrillo-Nava; Fernando Cortés-Guzmán
Journal:  Front Chem       Date:  2022-09-29       Impact factor: 5.545

  5 in total

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