Literature DB >> 21366304

Influence of external force on properties and reactivity of disulfide bonds.

Maria Francesca Iozzi1, Trygve Helgaker, Einar Uggerud.   

Abstract

The mechanochemistry of the disulfide bridge--that is, the influence of an externally applied force on the reactivity of the sulfur-sulfur bond--is investigated by unrestricted Kohn-Sham theory. Specifically, we apply the COGEF (constrained geometry simulates external force) approach to characterize the mechanochemistry of the disulfide bond in three different chemical environments: dimethyl disulfide, cystine, and a 102-atom model of the I27 domain in the titin protein. Furthermore, the mechanism of the thiol-disulfide reduction reaction under the effect of an external force is investigated by considering the COGEF potential for the adduct and transition-state clusters. With the unrestricted Becke-three-parameter-Lee-Yang-Parr (UB3LYP) exchange-correlation functional in the 6-311++G(3df,3pd) orbital basis, the rupture force of dimethyl disulfide is 3.8 nN at a disulfide bond elongation of 35 pm. The interaction with neighboring groups and the effect of conformational rigidity of the protein environment have little influence on the mechanochemical characteristics. Upon stretching, we make the following observations: the diradical character of the disulfide bridge increases; the energy difference between the singlet ground state and low-lying triplet state decreases; and the disulfide reduction is promoted by an external force in the range 0.1-0.4 nN. Our model of the interplay between force and reaction mechanism is in qualitative agreement with experimental observations.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21366304     DOI: 10.1021/jp109428g

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  11 in total

1.  Mechanical force can fine-tune redox potentials of disulfide bonds.

Authors:  Ilona B Baldus; Frauke Gräter
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

2.  The Janus-faced role of external forces in mechanochemical disulfide bond cleavage.

Authors:  Przemyslaw Dopieralski; Jordi Ribas-Arino; Padmesh Anjukandi; Martin Krupicka; Janos Kiss; Dominik Marx
Journal:  Nat Chem       Date:  2013-06-16       Impact factor: 24.427

3.  Mechanochemical functionalization of disulfide linked hydrogels.

Authors:  Junmin Lee; Meredith N Silberstein; Amr A Abdeen; Sang Yup Kim; Kristopher A Kilian
Journal:  Mater Horiz       Date:  2016-06-02       Impact factor: 13.266

4.  Force dependency of biochemical reactions measured by single-molecule force-clamp spectroscopy.

Authors:  Ionel Popa; Pallav Kosuri; Jorge Alegre-Cebollada; Sergi Garcia-Manyes; Julio M Fernandez
Journal:  Nat Protoc       Date:  2013-06-06       Impact factor: 13.491

5.  Mechanical activation of a multimeric adhesive protein through domain conformational change.

Authors:  Sithara S Wijeratne; Eric Botello; Hui-Chun Yeh; Zhou Zhou; Angela L Bergeron; Eric W Frey; Jay M Patel; Leticia Nolasco; Nancy A Turner; Joel L Moake; Jing-fei Dong; Ching-Hwa Kiang
Journal:  Phys Rev Lett       Date:  2013-03-05       Impact factor: 9.161

6.  Structure and function of a fungal adhesin that binds heparin and mimics thrombospondin-1 by blocking T cell activation and effector function.

Authors:  T Tristan Brandhorst; René Roy; Marcel Wüthrich; Som Nanjappa; Hanna Filutowicz; Kevin Galles; Marco Tonelli; Darrell R McCaslin; Kenneth Satyshur; Bruce Klein
Journal:  PLoS Pathog       Date:  2013-07-11       Impact factor: 6.823

7.  Calculation and visualization of atomistic mechanical stresses in nanomaterials and biomolecules.

Authors:  Andrew T Fenley; Hari S Muddana; Michael K Gilson
Journal:  PLoS One       Date:  2014-12-11       Impact factor: 3.240

8.  Blastomyces Virulence Adhesin-1 Protein Binding to Glycosaminoglycans Is Enhanced by Protein Disulfide Isomerase.

Authors:  Audrey Beaussart; Tristan Brandhorst; Yves F Dufrêne; Bruce S Klein
Journal:  MBio       Date:  2015-09-22       Impact factor: 7.867

9.  The effect of tensile stress on the conformational free energy landscape of disulfide bonds.

Authors:  Padmesh Anjukandi; Przemyslaw Dopieralski; Jordi Ribas-Arino; Dominik Marx
Journal:  PLoS One       Date:  2014-10-06       Impact factor: 3.240

10.  Differences in the Abilities to Mechanically Eliminate Activation Energies for Unimolecular and Bimolecular Reactions.

Authors:  Gurpaul S Kochhar; Nicholas J Mosey
Journal:  Sci Rep       Date:  2016-03-14       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.