Literature DB >> 21366243

His75-Asp97 cluster in green proteorhodopsin.

Franziska Hempelmann1, Soraya Hölper, Mirka-Kristin Verhoefen, Andreas C Woerner, Thomas Köhler, Sarah-Anna Fiedler, Nicole Pfleger, Josef Wachtveitl, Clemens Glaubitz.   

Abstract

The proteorhodopsin (PR) family found in bacteria near the ocean's surface consists of hundreds of PR variants color-tuned to their environment. PR contains a highly conserved single histidine at position 75, which is not found in most other retinal proteins. Using (13)C and (15)N MAS NMR, we were able to prove for green PR that His75 forms a pH-dependent H-bond with the primary proton acceptor Asp97, which explains its unusually high pK(a). The functional role of His75 has been studied using site-directed mutagenesis and time-resolved optical spectroscopy: Ultrafast vis-pump/vis-probe experiments on PR(H75N) showed that the primary reaction dynamics is retained, while flash photolysis experiments revealed an accelerated photocycle. Our data show the formation of a pH-dependent His-Asp cluster which might be typical for eubacterial retinal proteins. Despite its stabilizing function, His75 was found to slow the photocycle in wild-type PR. This means that PR was not optimized by evolution for fast proton transfer, which raises questions about its true function in vivo.

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Year:  2011        PMID: 21366243     DOI: 10.1021/ja111116a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Density functional study on size-dependent structures, stabilities, electronic and magnetic properties of Au(n)M (M = Al and Si, n = 1-9) clusters: comparison with pure gold clusters.

Authors:  Yan-Fang Li; Ai-Jie Mao; Yang Li; Xiao-Yu Kuang
Journal:  J Mol Model       Date:  2011-12-14       Impact factor: 1.810

2.  Aspartate-histidine interaction in the retinal schiff base counterion of the light-driven proton pump of Exiguobacterium sibiricum.

Authors:  S P Balashov; L E Petrovskaya; E P Lukashev; E S Imasheva; A K Dioumaev; J M Wang; S V Sychev; D A Dolgikh; A B Rubin; M P Kirpichnikov; J K Lanyi
Journal:  Biochemistry       Date:  2012-07-10       Impact factor: 3.162

3.  Assembling a Correctly Folded and Functional Heptahelical Membrane Protein by Protein Trans-splicing.

Authors:  Michaela Mehler; Carl Elias Eckert; Alena Busche; Jennifer Kulhei; Jonas Michaelis; Johanna Becker-Baldus; Josef Wachtveitl; Volker Dötsch; Clemens Glaubitz
Journal:  J Biol Chem       Date:  2015-09-24       Impact factor: 5.157

Review 4.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

5.  The EF loop in green proteorhodopsin affects conformation and photocycle dynamics.

Authors:  Michaela Mehler; Frank Scholz; Sandra J Ullrich; Jiafei Mao; Markus Braun; Lynda J Brown; Richard C D Brown; Sarah A Fiedler; Johanna Becker-Baldus; Josef Wachtveitl; Clemens Glaubitz
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

6.  Allosteric Effects of the Proton Donor on the Microbial Proton Pump Proteorhodopsin.

Authors:  Sadegh Faramarzi; Jun Feng; Blake Mertz
Journal:  Biophys J       Date:  2018-08-29       Impact factor: 4.033

7.  Gloeobacter rhodopsin, limitation of proton pumping at high electrochemical load.

Authors:  Arend Vogt; Jonas Wietek; Peter Hegemann
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

8.  Photocycle-dependent conformational changes in the proteorhodopsin cross-protomer Asp-His-Trp triad revealed by DNP-enhanced MAS-NMR.

Authors:  Jakob Maciejko; Jagdeep Kaur; Johanna Becker-Baldus; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-04       Impact factor: 11.205

9.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

Authors:  Keiichi Inoue
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

10.  Photocycle of Exiguobacterium sibiricum rhodopsin characterized by low-temperature trapping in the IR and time-resolved studies in the visible.

Authors:  Andrei K Dioumaev; Lada E Petrovskaya; Jennifer M Wang; Sergei P Balashov; Dmitriy A Dolgikh; Mikhail P Kirpichnikov; Janos K Lanyi
Journal:  J Phys Chem B       Date:  2013-06-10       Impact factor: 2.991

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