Literature DB >> 21361524

Accelerating the convergence of path integral dynamics with a generalized Langevin equation.

Michele Ceriotti1, David E Manolopoulos, Michele Parrinello.   

Abstract

The quantum nature of nuclei plays an important role in the accurate modelling of light atoms such as hydrogen, but it is often neglected in simulations due to the high computational overhead involved. It has recently been shown that zero-point energy effects can be included comparatively cheaply in simulations of harmonic and quasiharmonic systems by augmenting classical molecular dynamics with a generalized Langevin equation (GLE). Here we describe how a similar approach can be used to accelerate the convergence of path integral (PI) molecular dynamics to the exact quantum mechanical result in more strongly anharmonic systems exhibiting both zero point energy and tunnelling effects. The resulting PI-GLE method is illustrated with applications to a double-well tunnelling problem and to liquid water.

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Year:  2011        PMID: 21361524     DOI: 10.1063/1.3556661

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Nuclear quantum effects and hydrogen bond fluctuations in water.

Authors:  Michele Ceriotti; Jérôme Cuny; Michele Parrinello; David E Manolopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-06       Impact factor: 11.205

2.  Ab initio thermodynamics of liquid and solid water.

Authors:  Bingqing Cheng; Edgar A Engel; Jörg Behler; Christoph Dellago; Michele Ceriotti
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-04       Impact factor: 11.205

3.  Combined QM/MM, Machine Learning Path Integral Approach to Compute Free Energy Profiles and Kinetic Isotope Effects in RNA Cleavage Reactions.

Authors:  Timothy J Giese; Jinzhe Zeng; Şölen Ekesan; Darrin M York
Journal:  J Chem Theory Comput       Date:  2022-06-16       Impact factor: 6.578

4.  A generalized class of strongly stable and dimension-free T-RPMD integrators.

Authors:  Jorge L Rosa-Raíces; Jiace Sun; Nawaf Bou-Rabee; Thomas F Miller
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

Review 5.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

6.  Force-field functor theory: classical force-fields which reproduce equilibrium quantum distributions.

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Journal:  Front Chem       Date:  2013-10-25       Impact factor: 5.221

7.  Calculating Photoabsorption Cross-Sections for Atmospheric Volatile Organic Compounds.

Authors:  Antonio Prlj; Emanuele Marsili; Lewis Hutton; Daniel Hollas; Darya Shchepanovska; David R Glowacki; Petr Slavíček; Basile F E Curchod
Journal:  ACS Earth Space Chem       Date:  2021-12-17       Impact factor: 3.475

8.  Local Kernel Regression and Neural Network Approaches to the Conformational Landscapes of Oligopeptides.

Authors:  Raimon Fabregat; Alberto Fabrizio; Edgar A Engel; Benjamin Meyer; Veronika Juraskova; Michele Ceriotti; Clemence Corminboeuf
Journal:  J Chem Theory Comput       Date:  2022-02-18       Impact factor: 6.006

9.  Inverse Temperature Dependence of Nuclear Quantum Effects in DNA Base Pairs.

Authors:  Wei Fang; Ji Chen; Mariana Rossi; Yexin Feng; Xin-Zheng Li; Angelos Michaelides
Journal:  J Phys Chem Lett       Date:  2016-05-24       Impact factor: 6.475

10.  Nuclear Quantum Effects from the Analysis of Smoothed Trajectories: Pilot Study for Water.

Authors:  Dénes Berta; Dávid Ferenc; Imre Bakó; Ádám Madarász
Journal:  J Chem Theory Comput       Date:  2020-04-29       Impact factor: 6.006

  10 in total

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