Literature DB >> 21359682

The coded functions of noncoding RNAs for gene regulation.

Sojin An1, Ji-Joon Song.   

Abstract

For eukaryotes, fine tuning of gene expression is necessary to coordinate complex genetic information. Recent studies have shown that noncoding RNAs (ncRNAs) play central roles in this process. For example, ncRNAs participate in multiple diverse functions such as mRNA degradation, epigenetic regulation and alternative splicing. The findings regarding this new player in gene regulation suggest that the mechanism of gene regulation is much more complicated and subtle than previously thought. In this review, new findings concerning the role of ncRNAs in gene regulation are discussed.

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Year:  2011        PMID: 21359682      PMCID: PMC3887622          DOI: 10.1007/s10059-011-1004-8

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  63 in total

1.  RNA: guiding gene silencing.

Authors:  M Matzke; A J Matzke; J M Kooter
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  Epigenetic dynamics of imprinted X inactivation during early mouse development.

Authors:  Ikuhiro Okamoto; Arie P Otte; C David Allis; Danny Reinberg; Edith Heard
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

Review 3.  Alternative splicing: new insights from global analyses.

Authors:  Benjamin J Blencowe
Journal:  Cell       Date:  2006-07-14       Impact factor: 41.582

4.  Induction of Instability at Selected Loci in Maize.

Authors:  B McClintock
Journal:  Genetics       Date:  1953-11       Impact factor: 4.562

5.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

6.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

7.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

8.  Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Authors:  Colin D Malone; Julius Brennecke; Monica Dus; Alexander Stark; W Richard McCombie; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

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  10 in total

1.  Identification and characterization of a noncoding RNA at the mouse Pcna locus.

Authors:  Ji-Yeon Lee; Abdul Aziz Khan; Hyehyun Min; Xinnan Wang; Myoung Hee Kim
Journal:  Mol Cells       Date:  2012-01-02       Impact factor: 5.034

2.  Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline.

Authors:  Jianqiang Bao; Jingwen Wu; Andrew S Schuster; Grant W Hennig; Wei Yan
Journal:  Biol Reprod       Date:  2013-11-07       Impact factor: 4.285

Review 3.  Emerging players in prostate cancer: long non-coding RNAs.

Authors:  Tong Sun; Huihui Ye; Chin-Lee Wu; Gwo-Shu Mary Lee; Philip W Kantoff
Journal:  Am J Clin Exp Urol       Date:  2014-12-25

4.  Small RNAs induce the activation of the pro-inflammatory TLR7 signaling pathway in aged rat kidney.

Authors:  Eun Kyeong Lee; Ki Wung Chung; Ye Ra Kim; Sugyeong Ha; Sung Dae Kim; Dae Hyun Kim; Kyung Jin Jung; Bonggi Lee; Eunok Im; Byung Pal Yu; Hae Young Chung
Journal:  Aging Cell       Date:  2017-06-30       Impact factor: 9.304

5.  Identification of mRNAs related to endometrium function regulated by lncRNA CD36-005 in rat endometrial stromal cells.

Authors:  Xueying Zhang; Ying Xu; Lulu Fu; Dandan Li; Xiaowei Dai; Lianlian Liu; Jingshun Zhang; Lianwen Zheng; Manhua Cui
Journal:  Reprod Biol Endocrinol       Date:  2018-10-15       Impact factor: 5.211

6.  Silencing an insulin-induced lncRNA, LncASIR, impairs the transcriptional response to insulin signalling in adipocytes.

Authors:  Ufuk Degirmenci; Jia Li; Yen Ching Lim; Diana Teh Chee Siang; Shibo Lin; Hui Liang; Lei Sun
Journal:  Sci Rep       Date:  2019-04-04       Impact factor: 4.379

7.  Comprehensive Analysis of lncRNA and miRNA Regulatory Network Reveals Potential Prognostic Non-coding RNA Involved in Breast Cancer Progression.

Authors:  Sheng Gao; Xun Lu; Jingjing Ma; Qian Zhou; RanRan Tang; Ziyi Fu; Fengliang Wang; Mingming Lv; Cheng Lu
Journal:  Front Genet       Date:  2021-06-18       Impact factor: 4.599

Review 8.  Biases in small RNA deep sequencing data.

Authors:  Carsten A Raabe; Thean-Hock Tang; Juergen Brosius; Timofey S Rozhdestvensky
Journal:  Nucleic Acids Res       Date:  2013-11-05       Impact factor: 16.971

9.  Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation.

Authors:  Ruibing Chen; Yun Liu; Hao Zhuang; Baicai Yang; Kaiwen Hei; Mingming Xiao; Chunyu Hou; Huajun Gao; Xinran Zhang; Chenxi Jia; Lingjun Li; Yongmei Li; Ning Zhang
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

10.  Chemical capping improves template switching and enhances sequencing of small RNAs.

Authors:  Madalee G Wulf; Sean Maguire; Nan Dai; Alice Blondel; Dora Posfai; Keerthana Krishnan; Zhiyi Sun; Shengxi Guan; Ivan R Corrêa
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

  10 in total

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